Evidence map›Paper›PMID 30808654›Full record

ArticleLife science alliance2019

Main constraints for RNAi induced by expressed long dsRNA in mouse cells.

Tomas Demeter, Michaela Vaskovicova, Radek Malik, Filip Horvat, Josef Pasulka, Eliska Svobodova, Matyas Flemr, Petr Svoboda

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
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  5. Article
  6. AGO2 silences mobile transposons in the nucleus of quiescent cells.Nature structural & molecular biology · 2023
    Article
  7. Article
  8. Article
  9. Article
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  11. Article
  12. Feeding exogenous dsRNA interferes with endogenous sRNA accumulation in Paramecium.DNA research : an international journal for rapid publication of reports on genes and genomes · 2020
    Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Tomas DemeterInstitute of Molecular Genetics, Academy of Sciences of the Czech Republic, Prague, Czech Republic.
Michaela VaskovicovaInstitute of Molecular Genetics, Academy of Sciences of the Czech Republic, Prague, Czech Republic.
Radek MalikInstitute of Molecular Genetics, Academy of Sciences of the Czech Republic, Prague, Czech Republic.ORCID 0000-0002-6783-1146
Filip HorvatInstitute of Molecular Genetics, Academy of Sciences of the Czech Republic, Prague, Czech Republic.ORCID 0000-0002-1896-7645
Josef PasulkaInstitute of Molecular Genetics, Academy of Sciences of the Czech Republic, Prague, Czech Republic.
Eliska SvobodovaInstitute of Molecular Genetics, Academy of Sciences of the Czech Republic, Prague, Czech Republic.
Matyas FlemrInstitute of Molecular Genetics, Academy of Sciences of the Czech Republic, Prague, Czech Republic.
Petr SvobodaInstitute of Molecular Genetics, Academy of Sciences of the Czech Republic, Prague, Czech Republic svobodap@img.cas.cz.ORCID 0000-0002-4370-3705
Czech Academy of Sciences · CZUniversity of Zagreb · HR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNAi is the sequence-specific mRNA degradation guided by siRNAs produced from long dsRNA by RNase Dicer. Proteins executing RNAi are present in mammalian cells but rather sustain the microRNA pathway. Aiming for a systematic analysis of mammalian RNAi, we report here that the main bottleneck for RNAi efficiency is the production of functional siRNAs, which integrates Dicer activity, dsRNA structure, and siRNA targeting efficiency. Unexpectedly, increased expression of Dicer cofactors TARBP2 or PACT reduces RNAi but not microRNA function. Elimination of protein kinase R, a key dsRNA sensor in the interferon response, had minimal positive effects on RNAi activity in fibroblasts. Without high Dicer activity, RNAi can still occur when the initial Dicer cleavage of the substrate yields an efficient siRNA. Efficient mammalian RNAi may use substrates with some features of microRNA precursors, merging both pathways even more than previously suggested. Although optimized endogenous Dicer substrates mimicking miRNA features could evolve for endogenous regulations, the same principles would make antiviral RNAi inefficient as viruses would adapt to avoid efficacy.

Indexed as

AnimalsBase SequenceCarrier ProteinsDEAD-box RNA HelicaseseIF-2 KinaseGene Knockout TechniquesMiceMicroRNAsNIH 3T3 CellsPlasmidsRibonuclease IIIRNA-Binding ProteinsRNA, Double-StrandedRNA InterferenceRNA, Small InterferingTrans-Activation Responsive RNA-Binding ProteinCarrier ProteinsDEAD-box RNA HelicasesDicer1 protein, mouseeIF-2 KinaseMicroRNAsprotein kinase R, mouseRbbp6 protein, mouseRibonuclease IIIRNA-Binding ProteinsRNA, Double-StrandedRNA, Small InterferingTrans-Activation Responsive RNA-Binding Protein

Identifiers

PMID30808654
PMCPMC6391682
OpenAlexW2952648662

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.