Evidence map›Paper›PMID 30808531›Full record

ReviewTrends in genetics : TIG2019

Diverse Genome Topologies Characterize Dosage Compensation across Species.

William Jordan, Leila E Rieder, Erica Larschan

Abstract readReview
In one paragraph

Review in Trends in genetics : TIG, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Compensation of gene dosage on the mammalian X.Development (Cambridge, England) · 2024
    Review
  6. Article
  7. Article
  8. Combinatorial clustering of distinct DNA motifs directs synergistic binding ofProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. The X chromosome in C. elegans sex determination and dosage compensation.Current opinion in genetics & development · 2022
    Review
  10. Dosage compensation inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Review
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

William JordanDepartment of Molecular Biology, Cellular Biology and Biochemistry, Brown University, Providence, RI, USA.
Leila E RiederDepartment of Molecular Biology, Cellular Biology and Biochemistry, Brown University, Providence, RI, USA; Department of Biology, Emory University, Atlanta, GA, USA.
Erica LarschanDepartment of Molecular Biology, Cellular Biology and Biochemistry, Brown University, Providence, RI, USA. Electronic address: erica_larschan@brown.edu.

Funding

Establishing coordinate gene regulation during Drosophila dosage compensationR01GM098461 · NIGMS · BROWN UNIVERSITY · PI LARSCHAN, ERICA NICOLE · 2011 to 2016
$2.1M
Establishment of Active Chromatin DomainsR35GM126994 · NIGMS · BROWN UNIVERSITY · PI LARSCHAN, ERICA NICOLE · 2018 to 2022
$2.0M
NIGMS NIH HHS R01 GM098461NIGMS NIH HHS R35 GM126994
6 · The paper itself

Abstract

Dosage compensation is the process by which transcript levels of the X chromosome are equalized with those of autosomes. Although diverse mechanisms of dosage compensation have evolved across species, these mechanisms all involve distinguishing the X chromosome from autosomes. Because one chromosome is singled out from other chromosomes for precise regulation, dosage compensation serves as an important model for understanding how specific cis-elements are identified within the highly compacted 3D genome to co-regulate thousands of genes. Recently, multiple genomic approaches have provided key insights into the mechanisms of dosage compensation, extending what we have learned from classical genetic studies. In the future, newer genomic approaches that require little starting material show great promise to provide an understanding of the heterogeneity of dosage compensation between cells and how it functions in nonmodel organisms.

Indexed as

Dosage Compensation, GeneticGenetic VariationGenomeGenomicsAnimalsChromatinChromosomesEpigenesis, GeneticHigh-Throughput Nucleotide SequencingHumansSequence Analysis, DNAChromatin

Identifiers

PMID30808531
PMCPMC6430960

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.