Evidence map›Paper›PMID 30807574›Full record

ArticlePLoS biology2019

Time-dependent Pax3-mediated chromatin remodeling and cooperation with Six4 and Tead2 specify the skeletal myogenic lineage in developing mesoderm.

Alessandro Magli, June Baik, Lauren J Mills, Il-Youp Kwak, Bridget S Dillon, Ricardo Mondragon Gonzalez, David A Stafford, Scott A Swanson, Ron Stewart, James A Thomson and 3 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Regulation of muscle stem cell fate.Cell regeneration (London, England) · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. M-Cadherin Is a PAX3 Target During Myotome Patterning.Frontiers in cell and developmental biology · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Master control: transcriptional regulation of mammalian Myod.Journal of muscle research and cell motility · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Alessandro MagliDepartment of Medicine, Lillehei Heart Institute, University of Minnesota, Minneapolis, Minnesota, United States of America.ORCID 0000-0003-3874-2838
June BaikDepartment of Medicine, Lillehei Heart Institute, University of Minnesota, Minneapolis, Minnesota, United States of America.
Lauren J MillsDepartment of Pediatrics, University of Minnesota, Minneapolis, Minnesota, United States of America.
Il-Youp KwakDepartment of Medicine, Lillehei Heart Institute, University of Minnesota, Minneapolis, Minnesota, United States of America.ORCID 0000-0002-7117-7669
Bridget S DillonDepartment of Medicine, Lillehei Heart Institute, University of Minnesota, Minneapolis, Minnesota, United States of America.
Ricardo Mondragon GonzalezDepartment of Medicine, Lillehei Heart Institute, University of Minnesota, Minneapolis, Minnesota, United States of America.ORCID 0000-0001-5645-3090
David A StaffordDepartment of Molecular and Cell Biology, University of California, Berkeley, California, United States of America.
Scott A SwansonMorgridge Institute for Research, Madison, Wisconsin, United States of America.ORCID 0000-0002-3314-0515
Ron StewartMorgridge Institute for Research, Madison, Wisconsin, United States of America.
James A ThomsonMorgridge Institute for Research, Madison, Wisconsin, United States of America.
Daniel J GarryDepartment of Medicine, Lillehei Heart Institute, University of Minnesota, Minneapolis, Minnesota, United States of America.
Brian D DynlachtDepartment of Pathology, New York University Cancer Institute, New York University School of Medicine, New York, New York, United States of America.
Rita C R PerlingeiroDepartment of Medicine, Lillehei Heart Institute, University of Minnesota, Minneapolis, Minnesota, United States of America.ORCID 0000-0001-9412-1118
University of Minnesota · USMorgridge Institute for Research · USNew York University · USUniversity of California, Berkeley · US

Funding

Midwestern Progenitor Cell ConsortiumU01HL100407 · NHLBI · UNIVERSITY OF MINNESOTA · PI GARRY, DANIEL J., KYBA, MICHAEL · 2009 to 2015
$7.8M
Gene Expression in Amphibian DevlopementR01GM042341 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HARLAND, RICHARD M · 1988 to 2016
$5.7M
Skeletal Muscle Regeneration from Differentiating Pluripotent Stem CellsR01AR055299 · NIAMS · UNIVERSITY OF MINNESOTA · PI PERLINGEIRO, RITA C. R. · 2008 to 2018
$3.3M
Targeting Dystroglycanopathies using Pluripotent-derived Myogenic ProgenitorsR01AR071439 · NIAMS · UNIVERSITY OF MINNESOTA · PI PERLINGEIRO, RITA C. R. · 2017 to 2021
$1.9M
Regulation of myogenic transcription by the Paf1C complexR01GM122395 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DYNLACHT, BRIAN D · 2017 to 2020
$1.7M
Skeletal Muscle Regeneration from Pluripotent Stem CellsR56AR055299 · NIAMS · UNIVERSITY OF MINNESOTA · PI PERLINGEIRO, RITA C. R. · 2020 to 2020
$424k
Epigenomic regulation in skeletal muscle cells and their precursorsR21AR068786 · NIAMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DYNLACHT, BRIAN D · 2016 to 2017
$410k
NHLBI NIH HHS U01 HL100407NIAMS NIH HHS R01 AR055299NIAMS NIH HHS R01 AR071439NIAMS NIH HHS R21 AR068786NIAMS NIH HHS R56 AR055299NIGMS NIH HHS R01 GM042341NIGMS NIH HHS R01 GM122395
6 · The paper itself

Abstract

The transcriptional mechanisms driving lineage specification during development are still largely unknown, as the interplay of multiple transcription factors makes it difficult to dissect these molecular events. Using a cell-based differentiation platform to probe transcription function, we investigated the role of the key paraxial mesoderm and skeletal myogenic commitment factors-mesogenin 1 (Msgn1), T-box 6 (Tbx6), forkhead box C1 (Foxc1), paired box 3 (Pax3), Paraxis, mesenchyme homeobox 1 (Meox1), sine oculis-related homeobox 1 (Six1), and myogenic factor 5 (Myf5)-in paraxial mesoderm and skeletal myogenesis. From this study, we define a genetic hierarchy, with Pax3 emerging as the gatekeeper between the presomitic mesoderm and the myogenic lineage. By assaying chromatin accessibility, genomic binding and transcription profiling in mesodermal cells from mouse and human Pax3-induced embryonic stem cells and Pax3-null embryonic day (E)9.5 mouse embryos, we identified conserved Pax3 functions in the activation of the skeletal myogenic lineage through modulation of Hedgehog, Notch, and bone morphogenetic protein (BMP) signaling pathways. In addition, we demonstrate that Pax3 molecular function involves chromatin remodeling of its bound elements through an increase in chromatin accessibility and cooperation with sine oculis-related homeobox 4 (Six4) and TEA domain family member 2 (Tead2) factors. To our knowledge, these data provide the first integrated analysis of Pax3 function, demonstrating its ability to remodel chromatin in mesodermal cells from developing embryos and proving a mechanistic footing for the transcriptional hierarchy driving myogenesis.

Indexed as

Chromatin Assembly and DisassemblyAnimalsBasic Helix-Loop-Helix ProteinsCell DifferentiationCell LineDNA-Binding ProteinsEmbryo, MammalianEmbryonic Stem CellsForkhead Transcription FactorsGene Expression Regulation, DevelopmentalHomeodomain ProteinsHumansMesodermMiceMice, TransgenicMuscle CellsBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsForkhead Transcription FactorsFoxc1 protein, mouseHomeodomain ProteinsMeox1 protein, mouseMsgn1 protein, mouseMyf5 protein, mouseMyogenic Regulatory Factor 5Pax3 protein, mousePAX3 Transcription FactorSix1 protein, mouseSix4 protein, mouseT-Box Domain ProteinsTbx6 protein, mouseTead2 protein, mouseTEA Domain Transcription FactorsTrans-ActivatorsTranscription Factors

Identifiers

PMID30807574
PMCPMC6390996
OpenAlexW2915844549

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.