Evidence map›Paper›PMID 30806792›Full record

ArticleHuman genetics2019

Exploring by whole exome sequencing patients with initial diagnosis of Rubinstein-Taybi syndrome: the interconnections of epigenetic machinery disorders.

Gloria Negri, Pamela Magini, Donatella Milani, Milena Crippa, Elisa Biamino, Maria Piccione, Stefano Sotgiu, Chiara Perrìa, Giuseppina Vitiello, Marina Frontali and 13 more

Open access · greenAbstract read
In one paragraph

Article in Human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Deficiency ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. A Stop-gain Variant c.220C>T (p.(Gln74*)) inThe Yale journal of biology and medicine · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Genes · 2022
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Observational
  19. Article
  20. AFrontiers in pediatrics · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 12 institutions in 2 countries.

Gloria NegriGenetica Medica, Dipartimento di Scienze della Salute, Università degli Studi di Milano, Milan, Italy.
Pamela MaginiU.O. Genetica Medica, Policlinico S. Orsola-Malpighi, Azienda Ospedaliero-Universitaria di Bologna, Bologna, Italy.
Donatella MilaniUnità di Pediatria ad alta Intensità di Cura, Fondazione IRCCS Ca' Granda, Milan, Italy.
Milena CrippaMedical Cytogenetics and Molecular Genetics Laboratory, IRCCS Istituto Auxologico Italiano, Milan, Italy.
Elisa BiaminoDipartimento di Pediatria, Università di Torino, Turin, Italy.
Maria PiccioneDipartimento Materno Infantile, Azienda Ospedali Riuniti Villa Sofia Cervello, Università di Palermo, Palermo, Italy.
Stefano SotgiuDipartimento di Medicina Clinica e Sperimentale, U.O.C. Neuropsichiatria Infantile, A.O.U. di Sassari, Sassari, Italy.
Chiara PerrìaDipartimento di Medicina Clinica e Sperimentale, U.O.C. Neuropsichiatria Infantile, A.O.U. di Sassari, Sassari, Italy.
Giuseppina VitielloDipartimento di Medicina Traslazionale, Sezione di Pediatria, Università Federico II, Naples, Italy.
Marina FrontaliIstituto di Farmacologia Traslazionale CNR, Rome, Italy.
Antonella BoniIRCCS Istituto delle Scienze Neurologiche di Bologna UOC Neuropsichiatria Infantile, Ospedale Bellaria, Bologna, Italy.
Elisabetta Di FedeGenetica Medica, Dipartimento di Scienze della Salute, Università degli Studi di Milano, Milan, Italy.
Maria Chiara GandiniGenetica Medica, Dipartimento di Scienze della Salute, Università degli Studi di Milano, Milan, Italy.
Elisa Adele ColomboGenetica Medica, Dipartimento di Scienze della Salute, Università degli Studi di Milano, Milan, Italy.
Michael J BamshadDepartment of Genome Sciences, Center for Mendelian Genomics, University of Washington, Seattle, WA, USA.
Deborah A NickersonDepartment of Genome Sciences, Center for Mendelian Genomics, University of Washington, Seattle, WA, USA.
Joshua D SmithDepartment of Genome Sciences, Center for Mendelian Genomics, University of Washington, Seattle, WA, USA.
Italia LoddoDipartimento di Medicina di Laboratorio e Biotecnologie Avanzate, IRCCS ISMETT, Palermo, Italy.
Palma FinelliMedical Cytogenetics and Molecular Genetics Laboratory, IRCCS Istituto Auxologico Italiano, Milan, Italy.
Marco SeriU.O. Genetica Medica, Policlinico S. Orsola-Malpighi, Azienda Ospedaliero-Universitaria di Bologna, Bologna, Italy.
Tommaso PippucciU.O. Genetica Medica, Policlinico S. Orsola-Malpighi, Azienda Ospedaliero-Universitaria di Bologna, Bologna, Italy.
Lidia LarizzaMedical Cytogenetics and Molecular Genetics Laboratory, IRCCS Istituto Auxologico Italiano, Milan, Italy.
Cristina GervasiniGenetica Medica, Dipartimento di Scienze della Salute, Università degli Studi di Milano, Milan, Italy. cristina.gervasini@unimi.it.ORCID http://orcid.org/0000-0002-1165-7935
University of Milan · ITIRCCS Azienda Ospedliero-Universitaria di Bologna Policlinico di Sant'Orsola · ITUniversity of Washington · USUniversity of Sassari · ITFondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico · ITIRCCS Istituto Auxologico Italiano · ITIstituti di Ricovero e Cura a Carattere Scientifico · ITIstituto delle Scienze Neurologiche di Bologna · ITIstituto di Farmacologia Traslazionale · ITOspedale Vincenzo Cervello · ITUniversity of Naples Federico II · ITUniversity of Turin · IT

Funding

UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
Associazione "RTS Una Vita Speciale ONLUS DigirareMinistry of Italian Health 08C623_2016NHGRI NIH HHS UM1 HG006493Università degli Studi di Milano Dotazione d'ateneo linea 2 del piano di sostegno alla ricerca
6 · The paper itself

Abstract

Rubinstein-Taybi syndrome (RSTS) is an autosomal-dominant neurodevelopmental disease affecting 1:125,000 newborns characterized by intellectual disability, growth retardation, facial dysmorphisms and skeletal abnormalities. RSTS is caused by mutations in genes encoding for writers of the epigenetic machinery: CREBBP (~ 60%) or its homologous EP300 (~ 10%). No causative mutation is identified in up to 30% of patients. We performed whole-exome sequencing (WES) on eight RSTS-like individuals who had normal high-resolution array CGH testing and were CREBBP- and EP300-mutation -negative, to identify the molecular cause. In four cases, we identified putatively causal variants in three genes (ASXL1, KMT2D and KMT2A) encoding members of the epigenetic machinery known to be associated with the Bohring-Opitz, Kabuki and Wiedemann-Steiner syndromes. Each variant is novel, de novo, fulfills the ACMG criteria and is predicted to result in loss-of-function leading to haploinsufficiency of the epi-gene. In two of the remaining cases, homozygous/compound heterozygous variants in XYLT2 and PLCB4 genes, respectively, associated with spondyloocular and auriculocondylar 2 syndromes and in the latter an additional candidate variant in XRN2, a gene yet unrelated to any disease, were detected, but their pathogenicity remains uncertain. These results underscore the broad clinical spectrum of Mendelian disorders of the epigenetic apparatus and the high rate of WES disclosure of the genetic basis in cases which may pose a challenge for phenotype encompassing distinct syndromes. The overlapping features of distinct intellectual disability syndromes reflect common pathogenic molecular mechanisms affecting the complex regulation of balance between open and closed chromatin.

Indexed as

Exome SequencingGenetic Association StudiesChildChild, PreschoolComparative Genomic HybridizationCREB-Binding ProteinE1A-Associated p300 ProteinEpigenesis, GeneticFaciesFemaleHumansInfantInfant, NewbornMaleMutationPhenotypeCREB-Binding ProteinE1A-Associated p300 ProteinEP300 protein, human

Identifiers

PMID30806792
PMCPMC6736609
OpenAlexW2917068478

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.