Evidence map›Paper›PMID 30805606›Full record

ArticleJournal of radiation research2019

Ionizing radiation affects the composition of the proteome of extracellular vesicles released by head-and-neck cancer cells in vitro.

Agata Abramowicz, Anna Wojakowska, Lukasz Marczak, Malgorzata Lysek-Gladysinska, Mateusz Smolarz, Michael D Story, Joanna Polanska, Piotr Widlak, Monika Pietrowska

Open access · goldAbstract read
In one paragraph

Article in Journal of radiation research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 67 citations in OpenAlex.

  1. Review
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  8. Effect of radiotherapy on the DNA cargo and cellular uptake mechanisms of extracellular vesicles.Strahlentherapie und Onkologie : Organ der Deutschen Rontgengesellschaft ... [et al] · 2023
    Review
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  15. -Omics potential of in vitro skin models for radiation exposure.Cellular and molecular life sciences : CMLS · 2022
    Review
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  19. Multimerin-1 and cancer: a review.Bioscience reports · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Agata AbramowiczCenter for Translational Research and Molecular Biology of Cancer, Maria Sklodowska-Curie Institute-Oncology Center, Gliwice Branch, ul. Wybrzeze Armii Krajowej 15, Gliwice, Poland.
Anna WojakowskaCenter for Translational Research and Molecular Biology of Cancer, Maria Sklodowska-Curie Institute-Oncology Center, Gliwice Branch, ul. Wybrzeze Armii Krajowej 15, Gliwice, Poland.
Lukasz MarczakInstitute of Bioorganic Chemistry, Polish Academy of Sciences, ul. Noskowskiego 12/14, Poznan, Poland.
Malgorzata Lysek-GladysinskaThe Jan Kochanowski University in Kielce, Institute of Biology, Department of Cell Biology and Electron Microscopy, ul. Swietokrzyska 15, Kielce, Poland.
Mateusz SmolarzCenter for Translational Research and Molecular Biology of Cancer, Maria Sklodowska-Curie Institute-Oncology Center, Gliwice Branch, ul. Wybrzeze Armii Krajowej 15, Gliwice, Poland.
Michael D StoryUniversity of Texas Southwestern Medical Center, Department of Radiation Oncology, Division of Molecular Radiation Biology, 5323 Harry Hines Boulevard, Dallas, TX, USA.
Joanna PolanskaFaculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology, ul. Akademicka 16, Gliwice, Poland.
Piotr WidlakCenter for Translational Research and Molecular Biology of Cancer, Maria Sklodowska-Curie Institute-Oncology Center, Gliwice Branch, ul. Wybrzeze Armii Krajowej 15, Gliwice, Poland.
Monika PietrowskaCenter for Translational Research and Molecular Biology of Cancer, Maria Sklodowska-Curie Institute-Oncology Center, Gliwice Branch, ul. Wybrzeze Armii Krajowej 15, Gliwice, Poland.
The Maria Sklodowska-Curie National Research Institute of Oncology · PLInstitute of Bioorganic Chemistry, Polish Academy of Sciences · PLJan Kochanowski University · PLSilesian University of Technology · PLThe University of Texas Southwestern Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Exosomes and other extracellular vesicles are key players in cell-to-cell communication, and it has been proposed that they are involved in different aspects of the response to ionizing radiation, including transmitting the radiation-induced bystander effect and mediating radioresistance. The functional role of exosomes depends on their molecular cargo, including proteome content. Here we aimed to establish the proteome profile of exosomes released in vitro by irradiated UM-SCC6 cells derived from human head-and-neck cancer and to identify processes associated with radiation-affected proteins. Exosomes and other small extracellular vesicles were purified by size-exclusion chromatography from cell culture media collected 24 h after irradiation of cells with a single 2, 4 or 8 Gy dose, and then proteins were identified using a shotgun LC-MS/MS approach. Exosome-specific proteins encoded by 1217 unique genes were identified. There were 472 proteins whose abundance in exosomes was significantly affected by radiation (at any dose), including 425 upregulated and 47 downregulated species. The largest group of proteins affected by radiation (369 species) included those with increased abundance at all radiation doses (≥2 Gy). Several gene ontology terms were associated with radiation-affected exosome proteins. Among overrepresented processes were those involved in the response to radiation, the metabolism of radical oxygen species, DNA repair, chromatin packaging, and protein folding. Hence, the protein content of exosomes released by irradiated cells indicates their actual role in mediating the response to ionizing radiation.

Indexed as

Radiation, IonizingCell Line, TumorDown-RegulationExosomesExtracellular VesiclesGene OntologyHead and Neck NeoplasmsHumansNeoplasm ProteinsProteomeUp-RegulationNeoplasm ProteinsProteomeexosomeshead-and-neck cancerproteomicsradiation response

Identifiers

PMID30805606
PMCPMC6530623
OpenAlexW2917347255

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.