Evidence map›Paper›PMID 30804532›Full record

ArticleNature chemical biology2019

Bidirectional modulation of HIF-2 activity through chemical ligands.

Dalei Wu, Xiaoyu Su, Jingping Lu, Sheng Li, Becky L Hood, Stefan Vasile, Nalini Potluri, Xiaotong Diao, Youngchang Kim, Sepideh Khorasanizadeh and 1 more

Abstract read
In one paragraph

Article in Nature chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 107 citations in OpenAlex.

  1. Review
  2. Review
  3. Juvenile hormone receptor relies on conserved domain interfaces for dimerization-dependent activity.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. The clinical landscape of HIF2α inhibitors in oncology.Nature reviews. Clinical oncology · 2026
    Review
  7. Context-dependent variability of HIF heterodimers influences interactions with macromolecular and small molecule partners.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Article
  9. Small Molecule Regulation of CLOCK:BMAL1 DNA Binding Activity.bioRxiv : the preprint server for biology · 2026
    Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Tuning the clock with BMAL1 ligand.Nature chemical biology · 2025
    Article
  18. Article
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Dalei WuHelmholtz International Lab, State Key Laboratory of Microbial Technology, Shandong University, Qingdao, China. dlwu@sdu.edu.cn.ORCID http://orcid.org/0000-0003-1817-7229
Xiaoyu SuIntegrative Metabolism Program, Sanford Burnham Prebys Medical Discovery Institute, Orlando, FL, USA.
Jingping LuIntegrative Metabolism Program, Sanford Burnham Prebys Medical Discovery Institute, Orlando, FL, USA.
Sheng LiDepartment of Medicine and UCSD DXMS Proteomics Resource, University of California, San Diego, La Jolla, CA, USA.
Becky L HoodConrad Prebys Center for Chemical Genomics, Sanford Burnham Prebys Medical Discovery Institute, Orlando, FL, USA.
Stefan VasileConrad Prebys Center for Chemical Genomics, Sanford Burnham Prebys Medical Discovery Institute, Orlando, FL, USA.
Nalini PotluriIntegrative Metabolism Program, Sanford Burnham Prebys Medical Discovery Institute, Orlando, FL, USA.
Xiaotong DiaoHelmholtz International Lab, State Key Laboratory of Microbial Technology, Shandong University, Qingdao, China.
Youngchang KimStructural Biology Center, Biosciences Division, Argonne National Laboratory, Argonne, IL, USA.
Sepideh KhorasanizadehIntegrative Metabolism Program, Sanford Burnham Prebys Medical Discovery Institute, Orlando, FL, USA.
Fraydoon RastinejadIntegrative Metabolism Program, Sanford Burnham Prebys Medical Discovery Institute, Orlando, FL, USA. fraydoon.rastinejad@ndm.ox.ac.uk.ORCID http://orcid.org/0000-0002-0784-9352
Sanford Burnham Prebys Medical Discovery Institute · USShandong University · CNArgonne National Laboratory · USDiscovery Institute · USUniversity of California San Diego · US

Funding

Identification of Hypoxia-Inducible Factor-2alpha Activators for Chronic Kidney Disease AnemiaR01DK118297 · NIDDK · UNIVERSITY OF OXFORD · PI RASTINEJAD, FRAYDOON · 2018 to 2021
$1.6M
Molecular Characterization of Mammalian bHLH-PAS Transcription FactorsR01GM117013 · NIGMS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI RASTINEJAD, FRAYDOON · 2016 to 2018
$1.2M
NIDDK NIH HHS R01 DK118297NIGMS NIH HHS R01 GM117013Wellcome Trust 210664/Z/18/Z
6 · The paper itself

Abstract

Hypoxia-inducible factor-2 (HIF-2) is a heterodimeric transcription factor formed through dimerization between an oxygen-sensitive HIF-2α subunit and its obligate partner subunit ARNT. Enhanced HIF-2 activity drives some cancers, whereas reduced activity causes anemia in chronic kidney disease. Therefore, modulation of HIF-2 activity via direct-binding ligands could provide many new therapeutic benefits. Here, we explored HIF-2α chemical ligands using combined crystallographic, biophysical, and cell-based functional studies. We found chemically unrelated antagonists to employ the same mechanism of action. Their binding displaced residue M252 from inside the HIF-2α PAS-B pocket toward the ARNT subunit to weaken heterodimerization. We also identified first-in-class HIF-2α agonists and found that they significantly displaced pocket residue Y281. Its dramatic side chain movement increases heterodimerization stability and transcriptional activity. Our findings show that despite binding to the same HIF-2α PAS-B pocket, ligands can manifest as inhibitors versus activators by mobilizing different pocket residues to allosterically alter HIF-2α-ARNT heterodimerization.

Indexed as

AnimalsAryl Hydrocarbon Receptor Nuclear TranslocatorBasic Helix-Loop-Helix ProteinsCrystallography, X-RayDimerizationLigandsMiceModels, MolecularProtein BindingProtein MultimerizationTranscription FactorsArnt protein, mouseAryl Hydrocarbon Receptor Nuclear TranslocatorBasic Helix-Loop-Helix ProteinsHIF-2 protein, mouseLigandsTranscription Factors

Identifiers

PMID30804532
PMCPMC6447045
OpenAlexW2912441777

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.