Evidence map›Paper›PMID 30804404›Full record

ArticleScientific reports2019

Functionality of membrane proteins overexpressed and purified from E. coli is highly dependent upon the strain.

Khadija Mathieu, Waqas Javed, Sylvain Vallet, Christian Lesterlin, Marie-Pierre Candusso, Feng Ding, Xiaohong Nancy Xu, Christine Ebel, Jean-Michel Jault, Cédric Orelle

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 57 citations in OpenAlex.

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  8. Proximity Labeling of Cell Surface Proteins via Cell Surface Remodeling.Methods in molecular biology (Clifton, N.J.) · 2025
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  13. Comparison of the immune effects of theFrontiers in microbiology · 2024
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  14. Bacterial Envelope Fractionation.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  15. Article
  16. Article
  17. Review
  18. Engineered nickel bioaccumulation inEngineering in life sciences · 2023
    Article
  19. Article
  20. eGFP as an All-in-One Tag for Purification of Membrane Proteins.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Khadija MathieuUniversité de Lyon, CNRS, UMR 5086 "Molecular Microbiology and Structural Biochemistry", IBCP, 69367, Lyon, France.
Waqas JavedUniversité de Lyon, CNRS, UMR 5086 "Molecular Microbiology and Structural Biochemistry", IBCP, 69367, Lyon, France.
Sylvain ValletUniversité de Lyon, CNRS, UMR 5086 "Molecular Microbiology and Structural Biochemistry", IBCP, 69367, Lyon, France.
Christian LesterlinUniversité de Lyon, CNRS, UMR 5086 "Molecular Microbiology and Structural Biochemistry", IBCP, 69367, Lyon, France.ORCID 0000-0002-9108-0848
Marie-Pierre CandussoUniversité de Lyon, CNRS, UMR 5086 "Molecular Microbiology and Structural Biochemistry", IBCP, 69367, Lyon, France.
Feng DingDepartment of Chemistry & Biochemistry, Old Dominion University, Norfolk, VA, 23529, USA.
Xiaohong Nancy XuDepartment of Chemistry & Biochemistry, Old Dominion University, Norfolk, VA, 23529, USA.ORCID 0000-0002-7470-1948
Christine EbelUniversité Grenoble Alpes, CNRS, CEA, IBS, 38000, Grenoble, France.
Jean-Michel JaultUniversité de Lyon, CNRS, UMR 5086 "Molecular Microbiology and Structural Biochemistry", IBCP, 69367, Lyon, France. jean-michel.jault@ibcp.fr.
Cédric OrelleUniversité de Lyon, CNRS, UMR 5086 "Molecular Microbiology and Structural Biochemistry", IBCP, 69367, Lyon, France. cedric.orelle@ibcp.fr.
Université Claude Bernard Lyon 1 · FROld Dominion University · USCentre National de la Recherche Scientifique · FR

Funding

Nanoassay for Realtime Molecular Probing ABC TransporterR01GM076440 · NIGMS · OLD DOMINION UNIVERSITY · PI XU, X. NANCY · 2006 to 2010
$1.7M
NIGMS NIH HHS R01 GM076440
6 · The paper itself

Abstract

Overexpression of correctly folded membrane proteins is a fundamental prerequisite for functional and structural studies. One of the most commonly used expression systems for the production of membrane proteins is Escherichia coli. While misfolded proteins typically aggregate and form inclusions bodies, membrane proteins that are addressed to the membrane and extractable by detergents are generally assumed to be properly folded. Accordingly, GFP fusion strategy is often used as a fluorescent proxy to monitor their expression and folding quality. Here we investigated the functionality of two different multidrug ABC transporters, the homodimer BmrA from Bacillus subtilis and the heterodimer PatA/PatB from Streptococcus pneumoniae, when produced in several E. coli strains with T7 expression system. Strikingly, while strong expression in the membrane of several strains could be achieved, we observed drastic differences in the functionality of these proteins. Moreover, we observed a general trend in which mild detergents mainly extract the population of active transporters, whereas a harsher detergent like Fos-choline 12 could solubilize transporters irrespective of their functionality. Our results suggest that the amount of T7 RNA polymerase transcripts may indirectly but notably impact the structure and activity of overexpressed membrane proteins, and advise caution when using GFP fusion strategy.

Indexed as

Gene ExpressionRecombinant Fusion ProteinsBiological TransportEscherichia coliGene Expression Regulation, BacterialGenes, ReporterMembrane ProteinsSpecies SpecificityTransport VesiclesMembrane ProteinsRecombinant Fusion Proteins

Identifiers

PMID30804404
PMCPMC6390180
OpenAlexW2920851817

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.