Evidence map›Paper›PMID 30804347›Full record

ArticleNature communications2019

Model selection may not be a mandatory step for phylogeny reconstruction.

Shiran Abadi, Dana Azouri, Tal Pupko, Itay Mayrose

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 142 papers.

0numbers the graph read from it
0cells of the map it votes in
142citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

142 citing papers in PubMed.

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  11. A new genus (MycoKeys · 2026
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  13. Identification ofPathogens (Basel, Switzerland) · 2025
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  17. Chemodiversity ofStudies in mycology · 2025
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82 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Shiran AbadiSchool of Plant Sciences and Food Security, Tel Aviv University, Ramat Aviv, Tel-Aviv, 69978, Israel.ORCID http://orcid.org/0000-0002-3932-6310
Dana AzouriSchool of Plant Sciences and Food Security, Tel Aviv University, Ramat Aviv, Tel-Aviv, 69978, Israel.
Tal PupkoSchool of Molecular Cell Biology & Biotechnology, Tel Aviv University, Ramat Aviv, Tel-Aviv, 69978, Israel. talp@tauex.tau.ac.il.
Itay MayroseSchool of Plant Sciences and Food Security, Tel Aviv University, Ramat Aviv, Tel-Aviv, 69978, Israel. itaymay@tauex.tau.ac.il.ORCID http://orcid.org/0000-0002-8460-1502

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Determining the most suitable model for phylogeny reconstruction constitutes a fundamental step in numerous evolutionary studies. Over the years, various criteria for model selection have been proposed, leading to debate over which criterion is preferable. However, the necessity of this procedure has not been questioned to date. Here, we demonstrate that although incongruency regarding the selected model is frequent over empirical and simulated data, all criteria lead to very similar inferences. When topologies and ancestral sequence reconstruction are the desired output, choosing one criterion over another is not crucial. Moreover, skipping model selection and using instead the most parameter-rich model, GTR+I+G, leads to similar inferences, thus rendering this time-consuming step nonessential, at least under current strategies of model selection.

Indexed as

Models, GeneticPhylogenyEvolution, Molecular

Identifiers

PMID30804347
PMCPMC6389923

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.