Evidence map›Paper›PMID 30804338›Full record

ArticleNature communications2019

Assembly and functionality of the ribosome with tethered subunits.

Nikolay A Aleksashin, Margus Leppik, Adam J Hockenberry, Dorota Klepacki, Nora Vázquez-Laslop, Michael C Jewett, Jaanus Remme, Alexander S Mankin

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Autonomous ribosome biogenesis in vitro.Nature communications · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Cell-free Biosynthesis of Peptidomimetics.Biotechnology and bioprocess engineering : BBE · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Nikolay A AleksashinCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.ORCID http://orcid.org/0000-0002-3403-7587
Margus LeppikInstitute of Molecular and Cell Biology, University of Tartu, Riia 23, 51010, Tartu, Estonia.
Adam J HockenberryDepartment of Chemical and Biological Engineering and Center for Synthetic Biology, Northwestern University, 2145 Sheridan Road, Evanston, IL, 60208, USA.ORCID http://orcid.org/0000-0001-9476-0104
Dorota KlepackiCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.
Nora Vázquez-LaslopCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.ORCID http://orcid.org/0000-0003-2256-693X
Michael C JewettDepartment of Chemical and Biological Engineering and Center for Synthetic Biology, Northwestern University, 2145 Sheridan Road, Evanston, IL, 60208, USA.ORCID http://orcid.org/0000-0003-2948-6211
Jaanus RemmeInstitute of Molecular and Cell Biology, University of Tartu, Riia 23, 51010, Tartu, Estonia. jaanus.remme@ut.ee.
Alexander S MankinCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA. shura@uic.edu.ORCID http://orcid.org/0000-0002-3301-827X

Funding

Unraveling context specificity of translation by elucidating the mechanism of action of auxiliary translation factorsR35GM127134 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ALEXANDER S MANKIN · 2018 to 2026
$3.2M
NIGMS NIH HHS R35 GM127134
6 · The paper itself

Abstract

Ribo-T is an engineered ribosome whose small and large subunits are tethered together by linking 16S rRNA and 23S rRNA in a single molecule. Although Ribo-T can support cell proliferation in the absence of wild type ribosomes, Ribo-T cells grow slower than those with wild type ribosomes. Here, we show that cell growth defect is likely explained primarily by slow Ribo-T assembly rather than its imperfect functionality. Ribo-T maturation is stalled at a late assembly stage. Several post-transcriptional rRNA modifications and some ribosomal proteins are underrepresented in the accumulated assembly intermediates and rRNA ends are incompletely trimmed. Ribosome profiling of Ribo-T cells shows no defects in translation elongation but reveals somewhat higher occupancy by Ribo-T of the start codons and to a lesser extent stop codons, suggesting that subunit tethering mildly affects the initiation and termination stages of translation. Understanding limitations of Ribo-T system offers ways for its future development.

Indexed as

Codon, InitiatorEscherichia coliProtein BiosynthesisRibosomal ProteinsRibosome SubunitsRNA, BacterialRNA Processing, Post-TranscriptionalRNA, Ribosomal, 16SRNA, Ribosomal, 23SCodon, InitiatorRibosomal ProteinsRNA, BacterialRNA, Ribosomal, 16SRNA, Ribosomal, 23S

Identifiers

PMID30804338
PMCPMC6389949

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.