Evidence map›Paper›PMID 30804124›Full record

ArticleIn vivo (Athens, Greece)

Comprehensive Analysis of Somatic Mutations in Colorectal Cancer With Peritoneal Metastasis.

Ju-Hee Lee, Byung Kyu Ahn, Seung Sam Baik, Kang Hong Lee

Open access · diamondAbstract read
In one paragraph

Article in In vivo (Athens, Greece). The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

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  16. Comparative Expression Analysis ofCancer diagnosis & prognosis
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ju-Hee LeeDepartment of Surgery, Dongguk University Medical Center, Gyeongju, Republic of Korea.
Byung Kyu AhnDepartment of Surgery, Hanyang University College of Medicine, Seoul, Republic of Korea.
Seung Sam BaikDepartment of Pathology, Hanyang University College of Medicine, Seoul, Republic of Korea.
Kang Hong LeeDepartment of Surgery, Hanyang University College of Medicine, Seoul, Republic of Korea leekh@hanyang.ac.kr.
Hanyang University · KRDongguk University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTo analyze for genetic mutations which may presage peritoneal metastasis by using targeted next-generation sequencing (NGS). MATERIALS AND

methodsFormalin-fixed, paraffin-embedded primary tumor specimens were obtained from 10 patients with small obstructing colorectal cancer and peritoneal metastasis (group A) and five with large non-obstructing colorectal cancer and no recurrence (group B). DNA was extracted for the sequencing of 409 cancer genes. The distribution of genetic mutations was compared between the two groups to find genetic mutations related to peritoneal metastasis.

resultsWhen the samples were sorted based on similarity of gene expression by hierarchical clustering analysis, the samples were well divided between the two study groups. Mutations in AT-rich interactive domain-containing protein 1A (ARID1A), polycystic kidney and hepatic disease 1 (PKHD1), ubiquitin-protein ligase E3 component n-recognin 5 (UBR5), paired box 5 (PAX5), tumor protein p53 (TP53), additional sex combs like 1 (ASXL1) and androgen receptor (AR) genes were detected more frequently in group A.

conclusionA number of somatic mutations presumed to be relevant to colorectal cancer with peritoneal metastasis were identified in our study by NGS.

Indexed as

Colorectal NeoplasmsDNA-Binding ProteinsDNA Mutational AnalysisFemaleHigh-Throughput Nucleotide SequencingHumansMaleMiddle AgedMutationNeoplasm MetastasisNeoplasm Recurrence, LocalNuclear ProteinsPAX5 Transcription FactorPeritoneal NeoplasmsReceptors, AndrogenReceptors, Cell SurfaceARID1A protein, humanASXL1 protein, humanDNA-Binding ProteinsNuclear ProteinsPAX5 protein, humanPAX5 Transcription FactorPKHD1 protein, humanReceptors, AndrogenReceptors, Cell SurfaceRepressor ProteinsTP53 protein, humanTranscription FactorsTumor Suppressor Protein p53Ubiquitin-Protein LigasesUBR5 protein, humanColorectal cancerperitoneal metastasissomatic mutations

Identifiers

PMID30804124
PMCPMC6506280
OpenAlexW2915455802

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.