Evidence map›Paper›PMID 30803482›Full record

ArticleeLife2019

Somatic mutations in early metazoan genes disrupt regulatory links between unicellular and multicellular genes in cancer.

Anna S Trigos, Richard B Pearson, Anthony T Papenfuss, David L Goode

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 3 pooled it
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 3 syntheses or guidelines pooled it, 75 citations in OpenAlex.

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  15. Evolutionary reversion in tumorigenesis.Frontiers in oncology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Anna S TrigosComputational Cancer Biology Program, Peter MacCallum Cancer Centre, Melbourne, Australia.ORCID 0000-0002-5915-2952
Richard B PearsonSir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, Australia.
Anthony T PapenfussComputational Cancer Biology Program, Peter MacCallum Cancer Centre, Melbourne, Australia.
David L GoodeComputational Cancer Biology Program, Peter MacCallum Cancer Centre, Melbourne, Australia.ORCID 0000-0002-3277-6562
The University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extensive transcriptional alterations are observed in cancer, many of which activate core biological processes established in unicellular organisms or suppress differentiation pathways formed in metazoans. Through rigorous, integrative analysis of genomics data from a range of solid tumors, we show many transcriptional changes in tumors are tied to mutations disrupting regulatory interactions between unicellular and multicellular genes within human gene regulatory networks (GRNs). Recurrent point mutations were enriched in regulator genes linking unicellular and multicellular subnetworks, while copy-number alterations affected downstream target genes in distinctly unicellular and multicellular regions of the GRN. Our results depict drivers of tumourigenesis as genes that created key regulatory links during the evolution of early multicellular life, whose dysfunction creates widespread dysregulation of primitive elements of the GRN. Several genes we identified as important in this process were associated with drug response, demonstrating the potential clinical value of our approach.

Indexed as

Cell Transformation, NeoplasticGene Regulatory NetworksGenes, RegulatorPoint MutationCarcinogenesisCell DifferentiationCell Line, TumorCell ProliferationGene DosageHumansNeoplasmsTranscription, Geneticcancercancer biologycomputational biologyevolutionhumanmulticellularitymutationsnetworksorthologysystems biology

Identifiers

PMID30803482
PMCPMC6402835
OpenAlexW2949549557

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.