Evidence map›Paper›PMID 30802972›Full record

ArticleMedical physics2019

Radiomics robustness assessment and classification evaluation: A two-stage method demonstrated on multivendor FFDM.

Kayla Robinson, Hui Li, Li Lan, David Schacht, Maryellen Giger

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Medical physics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Association between Participant Characteristics and Breast Parenchymal Texture Variation among Postmenopausal Women.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2026
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  16. Tumor response prediction inEJNMMI physics · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Kayla RobinsonCommittee on Medical Physics, Department of Radiology, University of Chicago, MC 2026, 5841 South Maryland Avenue, Chicago, IL, 60637, USA.
Hui LiCommittee on Medical Physics, Department of Radiology, University of Chicago, MC 2026, 5841 South Maryland Avenue, Chicago, IL, 60637, USA.
Li LanCommittee on Medical Physics, Department of Radiology, University of Chicago, MC 2026, 5841 South Maryland Avenue, Chicago, IL, 60637, USA.
David SchachtCommittee on Medical Physics, Department of Radiology, University of Chicago, MC 2026, 5841 South Maryland Avenue, Chicago, IL, 60637, USA.
Maryellen GigerCommittee on Medical Physics, Department of Radiology, University of Chicago, MC 2026, 5841 South Maryland Avenue, Chicago, IL, 60637, USA.
University of Chicago Medical Center · USUniversity of Chicago · US

Funding

RESEARCH TRAINING IN MEDICAL PHYSICST32EB002103 · NIBIB · UNIVERSITY OF CHICAGO · PI ARMATO, SAMUEL G. · 2003 to 2019
$4.7M
Quantitative Image Analysis for Assessing Response to Breast Cancer TherapyU01CA195564 · NCI · UNIVERSITY OF CHICAGO · PI GIGER, MARYELLEN L. · 2015 to 2019
$2.5M
COMPUTER AIDED DIAGNOSIS IN BREAST IMAGINGR01CA089452 · NCI · UNIVERSITY OF CHICAGO · PI GIGER, MARYELLEN L. · 2001 to 2005
$1.5M
Machine Learning in Breast Parenchyma and Tumor Characterization for Cancer Risk AssessmentF31CA228247 · NCI · UNIVERSITY OF CHICAGO · PI MENDEL, KAYLA RAE · 2019 to 2019
$24k
NCI NIH HHS F31 CA228247NCI NIH HHS R01 CA089452NCI NIH HHS U01 CA195564NIBIB NIH HHS T32 EB002103NIH HHS T32 EB002103NIH HHS U01 195564
6 · The paper itself

Abstract

purposeRadiomic texture analysis is typically performed on images acquired under specific, homogeneous imaging conditions. These controlled conditions may not be representative of the range of imaging conditions implemented clinically. We aim to develop a two-stage method of radiomic texture analysis that incorporates the reproducibility of individual texture features across imaging conditions to guide the development of texture signatures which are robust across mammography unit vendors.

methodsFull-field digital mammograms were retrospectively collected for women who underwent screening mammography on both a Hologic Lorad Selenia and GE Senographe 2000D system. Radiomic features were calculated on manually placed regions of interest in each image. In stage one (robustness assessment), we identified a set of nonredundant features that were reproducible across the two different vendors. This was achieved through hierarchical clustering and application of robustness metrics. In stage two (classification evaluation), we performed stepwise feature selection and leave-one-out quadratic discriminant analysis (QDA) to construct radiomic signatures. We refer to this two-state method as robustness assessment, classification evaluation (RACE). These radiomic signatures were used to classify the risk of breast cancer through receiver operator characteristic (ROC) analysis, using the area under the ROC curve as a figure of merit in the task of distinguishing between women with and without high-risk factors present. Generalizability was investigated by comparing the classification performance of a feature set on the images from which they were selected (intravendor) to the classification performance on images from the vendor on which it was not selected (intervendor). Intervendor and intravendor performances were also compared to the performance obtained by implementing ComBat, a feature-level harmonization method and to the performance by implementing ComBat followed by RACE.

resultsGeneralizability, defined as the difference between intervendor and intravendor classification performance, was shown to monotonically decrease as the number of clusters used in stage one increased (Mann-Kendall P < 0.001). Intravendor performance was not shown to be statistically different from ComBat harmonization while intervendor performance was significantly higher than ComBat. No significant difference was observed between either of the single methods and the use of ComBat followed by RACE.

conclusionsA two-stage method for robust radiomic signature construction is proposed and demonstrated in the task of breast cancer risk assessment. The proposed method was used to assess generalizability of radiomic texture signatures at varying levels of feature robustness criteria. The results suggest that generalizability of feature sets monotonically decreases as reproducibility of features decreases. This trend suggests that considerations of feature robustness in feature selection methodology could improve classifier generalizability in multifarious full-field digital mammography datasets collected on various vendor units. Additionally, harmonization methods such as ComBat may hold utility in classification schemes and should continue to be investigated.

Indexed as

AlgorithmsAdultAgedAged, 80 and overBreast NeoplasmsEarly Detection of CancerFemaleGenetic Predisposition to DiseaseHumansMammographyMiddle AgedRadiographic Image EnhancementRadiographic Image Interpretation, Computer-AssistedRisk AssessmentROC Curvebreast cancerradiomicsrobustness

Identifiers

PMID30802972
PMCPMC6510593
OpenAlexW2917489374

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.