Evidence map›Paper›PMID 30802260›Full record

ArticlePloS one2019

Nocardia polymerase chain reaction (PCR)-based assay performed on bronchoalveolar lavage fluid after lung transplantation: A prospective pilot study.

Julien Coussement, David Lebeaux, Najla El Bizri, Vincent Claes, Michel Kohnen, Deborah Steensels, Isabelle Étienne, Hélène Salord, Emmanuelle Bergeron, Veronica Rodriguez-Nava

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
11.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Frontiers in cellular and infection microbiology · 2021
    Pooled it
  2. Article
  3. Article
  4. A rare case of pulmonary nocardiosis comorbid with Sjogren's syndrome.Journal of clinical laboratory analysis · 2021
    Article
  5. Nocardia colonization in contrast to nocardiosis: a comparison of patients' clinical characteristics.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2020
    Article
  6. Review
  7. Detection ofEthiopian journal of health sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Julien CoussementDepartment of Infectious Diseases, CUB-Hôpital Erasme, Université Libre de Bruxelles, Brussels, Belgium.ORCID 0000-0002-4302-6599
David LebeauxService de Microbiologie, Unité Mobile de Microbiologie Clinique, Assistance Publique-Hôpitaux de Paris, Hôpital Européen Georges Pompidou, Université Paris Descartes, Sorbonne Paris Cité, Paris, France.
Najla El BizriDepartment of Microbiology, CUB-Hôpital Erasme, Université Libre de Bruxelles, Brussels, Belgium.
Vincent ClaesDepartment of Microbiology, CUB-Hôpital Erasme, Université Libre de Bruxelles, Brussels, Belgium.
Michel KohnenDepartment of Microbiology, CUB-Hôpital Erasme, Université Libre de Bruxelles, Brussels, Belgium.
Deborah SteenselsDepartment of Microbiology, CUB-Hôpital Erasme, Université Libre de Bruxelles, Brussels, Belgium.
Isabelle ÉtienneLung Transplantation Unit, CUB-Hôpital Erasme, Université Libre de Bruxelles, Brussels, Belgium.
Hélène SalordLaboratoire de Bactériologie, Hôpital de la Croix-Rousse, Lyon, France.
Emmanuelle BergeronResearch Group on Bacterial Opportunistic Pathogens and Environment, UMR CNRS5557, INRA1418 Écologie Microbienne, Observatoire Français des Nocardioses, Hospices Civils de Lyon, France, Université de Lyon 1, VetAgro Sup, Lyon, France.
Veronica Rodriguez-NavaResearch Group on Bacterial Opportunistic Pathogens and Environment, UMR CNRS5557, INRA1418 Écologie Microbienne, Observatoire Français des Nocardioses, Hospices Civils de Lyon, France, Université de Lyon 1, VetAgro Sup, Lyon, France.
Université Libre de Bruxelles · BEUniversité Claude Bernard Lyon 1 · FRHôpital de la Croix-Rousse · FRUniversité Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTransplant recipients are at risk of pulmonary nocardiosis, a life-threatening opportunistic infection caused by Nocardia species. Given the limitations of conventional diagnostic techniques (i.e., microscopy and culture), a polymerase chain reaction (PCR)-based assay was developed to detect Nocardia spp. on clinical samples. While this test is increasingly being used by transplant physicians, its performance characteristics are not well documented. We evaluated the performance characteristics of this test on bronchoalveolar lavage (BAL) fluid samples from lung transplant recipients (LTRs).

methodsWe prospectively included all BAL samples from LTRs undergoing bronchoscopy at our institution between December 2016 and June 2017 (either surveillance or clinically-indicated bronchoscopies). Presence of microbial pathogens was assessed using techniques available locally (including microscopy and 10-day culture for Nocardia). BAL samples were also sent to the French Nocardiosis Observatory (Lyon, France) for the Nocardia PCR-based assay. Transplant physicians and patients were blinded to the Nocardia PCR results.

resultsWe included 29 BAL samples from 21 patients (18 surveillance and 11 clinically-indicated bronchoscopies). Nocardiosis was not diagnosed in any of these patients by conventional techniques. However, Nocardia PCR was positive in five BAL samples from five of the patients (24%, 95% confidence interval: 11-45%); four were asymptomatic and undergoing surveillance bronchoscopy, and one was symptomatic and was later diagnosed with influenza virus infection. None of the five PCR-positive patients died or were diagnosed with nocardiosis during the median follow-up of 21 months after the index bronchoscopy (range: 20-23 months).

conclusionsIn this prospective study, Nocardia PCR was positive on BAL fluid from one fourth of the LTRs. Nocardia PCR-based assays should be used with caution on respiratory samples from LTRs because of the possible detection of airway colonization using this technique. Larger studies are required to determine the usefulness of the Nocardia PCR-based assay in transplant recipients.

Indexed as

AdultAgedBelgiumBronchoalveolar Lavage FluidFemaleHumansLung TransplantationMiddle AgedNocardiaNocardia InfectionsOpportunistic InfectionsPilot ProjectsPolymerase Chain ReactionProspective StudiesRNA, Ribosomal, 16SRNA, ViralRNA, Ribosomal, 16SRNA, Viral

Identifiers

PMID30802260
PMCPMC6388935
OpenAlexW2916491023

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.