Evidence map›Paper›PMID 30801254›Full record

ArticleJMIR public health and surveillance2019

Analytics for Investigation of Disease Outbreaks: Web-Based Analytics Facilitating Situational Awareness in Unfolding Disease Outbreaks.

Nileena Velappan, Ashlynn Rae Daughton, Geoffrey Fairchild, William Earl Rosenberger, Nicholas Generous, Maneesha Elizabeth Chitanvis, Forest Michael Altherr, Lauren A Castro, Reid Priedhorsky, Esteban Luis Abeyta and 7 more

Abstract read
In one paragraph

Article in JMIR public health and surveillance, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. In Vitro Selection of Antibodies TargetingPathogens (Basel, Switzerland) · 2026
    Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Nileena Velappan *Los Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0002-4488-9126
Ashlynn Rae Daughton *Los Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0003-1694-3268
Geoffrey FairchildLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0001-5500-8120
William Earl RosenbergerLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0002-7887-7596
Nicholas GenerousLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0003-2238-428X
Maneesha Elizabeth ChitanvisLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0001-8159-0038
Forest Michael AltherrLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0002-3052-4599
Lauren A CastroLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0002-9778-570X
Reid PriedhorskyLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0002-5348-0330
Esteban Luis AbeytaLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0001-5574-4822
Leslie A NaranjoLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0002-8276-2126
Attelia Dawn HollanderLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0002-6347-8074
Grace VuyisichLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0001-6526-1584
Antonietta Maria LilloLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0002-0457-6598
Emily Kathryn CloydLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0003-3369-6422
Ashvini Rajendra VaidyaLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0003-2097-9730
Alina DeshpandeLos Alamos National Laboratory, Los Alamos, NM, United States.ORCID http://orcid.org/0000-0003-4541-4410

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundInformation from historical infectious disease outbreaks provides real-world data about outbreaks and their impacts on affected populations. These data can be used to develop a picture of an unfolding outbreak in its early stages, when incoming information is sparse and isolated, to identify effective control measures and guide their implementation.

objectiveThis study aimed to develop a publicly accessible Web-based visual analytic called Analytics for the Investigation of Disease Outbreaks (AIDO) that uses historical disease outbreak information for decision support and situational awareness of an unfolding outbreak.

methodsWe developed an algorithm to allow the matching of unfolding outbreak data to a representative library of historical outbreaks. This process provides epidemiological clues that facilitate a user's understanding of an unfolding outbreak and facilitates informed decisions about mitigation actions. Disease-specific properties to build a complete picture of the unfolding event were identified through a data-driven approach. A method of analogs approach was used to develop a short-term forecasting feature in the analytic. The 4 major steps involved in developing this tool were (1) collection of historic outbreak data and preparation of the representative library, (2) development of AIDO algorithms, (3) development of user interface and associated visuals, and (4) verification and validation.

resultsThe tool currently includes representative historical outbreaks for 39 infectious diseases with over 600 diverse outbreaks. We identified 27 different properties categorized into 3 broad domains (population, location, and disease) that were used to evaluate outbreaks across all diseases for their effect on case count and duration of an outbreak. Statistical analyses revealed disease-specific properties from this set that were included in the disease-specific similarity algorithm. Although there were some similarities across diseases, we found that statistically important properties tend to vary, even between similar diseases. This may be because of our emphasis on including diverse representative outbreak presentations in our libraries. AIDO algorithm evaluations (similarity algorithm and short-term forecasting) were conducted using 4 case studies and we have shown details for the Q fever outbreak in Bilbao, Spain (2014), using data from the early stages of the outbreak. Using data from only the initial 2 weeks, AIDO identified historical outbreaks that were very similar in terms of their epidemiological picture (case count, duration, source of exposure, and urban setting). The short-term forecasting algorithm accurately predicted case count and duration for the unfolding outbreak.

conclusionsAIDO is a decision support tool that facilitates increased situational awareness during an unfolding outbreak and enables informed decisions on mitigation strategies. AIDO analytics are available to epidemiologists across the globe with access to internet, at no cost. In this study, we presented a new approach to applying historical outbreak data to provide actionable information during the early stages of an unfolding infectious disease outbreak.

Indexed as

algorithmepidemiologyinfectious diseasespublic health informaticsweb browser

Identifiers

PMID30801254
PMCPMC6409513

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.