Evidence map›Paper›PMID 30796472›Full record

ArticleCurrent genetics2019

CreA-independent carbon catabolite repression of cellulase genes by trimeric G-protein and protein kinase A in Aspergillus nidulans.

Emi Kunitake, Yi Li, Ryota Uchida, Takehiro Nohara, Keisuke Asano, Asato Hattori, Tetsuya Kimura, Kyoko Kanamaru, Makoto Kimura, Tetsuo Kobayashi

Abstract read
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In one paragraph

Article in Current genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Regulation of nutrient utilization in filamentous fungi.Applied microbiology and biotechnology · 2023
    Review
  7. Article
  8. Genome-wide transcription landscape of citric acid producingFrontiers in bioengineering and biotechnology · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Frontiers in microbiology · 2022
    Article
  13. Article
  14. Induction and Repression of Hydrolase Genes inFrontiers in microbiology · 2021
    Review
  15. Review
  16. Article
  17. Review
  18. Precision Engineering of the Transcription Factor Cre1 inFrontiers in bioengineering and biotechnology · 2020
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Emi KunitakeDepartment of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan.
Yi LiDepartment of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan.
Ryota UchidaDepartment of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan.
Takehiro NoharaDepartment of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan.
Keisuke AsanoDepartment of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan.
Asato HattoriDepartment of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan.
Tetsuya KimuraDepartment of Life Sciences, Graduate School of Bioresources, Mie University, 1577 Kurimamachiya‑cho, Tsu, Mie, 514‑8507, Japan.
Kyoko KanamaruDepartment of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan.
Makoto KimuraDepartment of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan.
Tetsuo KobayashiDepartment of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan. koba@agr.nagoya-u.ac.jp.ORCID http://orcid.org/0000-0002-4008-454X
Nagoya University · JPMie University · JP

Funding

Agriculture, Forestry and Fisheries Research Council 26011AInstitute for Fermentation, Osaka L-2018-2-020Japan Society for the Promotion of Science 17H06763Japan Society for the Promotion of Science 18H02125
6 · The paper itself

Abstract

Cellulase production in filamentous fungi is repressed by various carbon sources. In our preliminary survey in Aspergillus nidulans, degree of de-repression differed depending on carbon sources in a mutant of creA, encoding the transcriptional repressor for carbon catabolite repression (CCR). To further understand mechanisms of CCR of cellulase production, we compared the effects of creA deletion with deletion of protein kinase A (pkaA) and G (ganB) genes, which constitute a nutrient sensing and signaling pathway. In plate culture with carboxymethyl cellulose and D-glucose, deletion of pkaA and ganB, but not creA, led to significant de-repression of cellulase production. In submerged culture with cellobiose and D-glucose or 2-deoxyglucose, both creA or pkaA single deletion led to partial de-repression of cellulase genes with the highest level by their double deletion, while ganB deletion caused de-repression comparable to that of the creA/pkaA double deletion. With ball-milled cellulose and D-glucose, partial de-repression was detected by deletion of creA but not of pkaA or ganB. The creA/pkaA or creA/ganB double deletion led to earlier expression than the creA deletion. Furthermore, the effect of each deletion with D-xylose or L-arabinose as the repressing carbon source was significantly different from that with D-glucose, D-fructose, and D-mannose. Consequently, this study revealed that PkaA and GanB participate in CreA-independent CCR and that contribution of CreA, PkaA, and GanB in CCR differs depending on the inducers, repressing carbon sources, and culture conditions (plate or submerged). Further study of CreA-independent mechanisms is needed to fully understand CCR in filamentous fungi.

Indexed as

Aspergillus nidulansCarbonCatabolite RepressionCellulaseCyclic AMP-Dependent Protein KinasesCyclic GMP-Dependent Protein KinasesFungal ProteinsGene DeletionGene Expression Regulation, FungalGlucoseGTP-Binding ProteinsRepressor ProteinsCarbonCellulaseCreA protein, Aspergillus nidulansCyclic AMP-Dependent Protein KinasesCyclic GMP-Dependent Protein KinasesFungal ProteinsGlucoseGTP-Binding ProteinsRepressor ProteinsAspergillus nidulansCarbon catabolite repressionCellulaseGanBPkaA

Identifiers

PMID30796472
OpenAlexW2917145421

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.