Evidence map›Paper›PMID 30796301›Full record

ArticleScientific reports2019

Mutations in the palm domain disrupt modulation of acid-sensing ion channel 1a currents by neuropeptides.

Benoîte Bargeton, Justyna Iwaszkiewicz, Gaetano Bonifacio, Sophie Roy, Vincent Zoete, Stephan Kellenberger

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Structural basis for excitatory neuropeptide signaling.Nature structural & molecular biology · 2024
    Article
  4. Article
  5. Aromatic amino acids in the finger domain of the FMRFamide-gated NaPflugers Archiv : European journal of physiology · 2023
    Article
  6. Article
  7. Changes in HFrontiers in cellular neuroscience · 2021
    Article
  8. Article
  9. Mechanism and site of action of big dynorphin on ASIC1a.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. A NaThe Journal of biological chemistry · 2019
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Benoîte BargetonDepartment of Pharmacology and Toxicology, University of Lausanne, 1011, Lausanne, Switzerland.
Justyna IwaszkiewiczMolecular Modeling Group, Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland.
Gaetano BonifacioDepartment of Pharmacology and Toxicology, University of Lausanne, 1011, Lausanne, Switzerland.
Sophie RoyDepartment of Pharmacology and Toxicology, University of Lausanne, 1011, Lausanne, Switzerland.
Vincent ZoeteMolecular Modeling Group, Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland.ORCID 0000-0002-2336-6537
Stephan KellenbergerDepartment of Pharmacology and Toxicology, University of Lausanne, 1011, Lausanne, Switzerland. Stephan.Kellenberger@unil.ch.ORCID 0000-0003-1755-6198
University of Lausanne · CHSIB Swiss Institute of Bioinformatics · CH

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
NIGMS NIH HHS P41 GM103311
6 · The paper itself

Abstract

Modulation by neuropeptides enhances several functions of acid-sensing ion channels (ASICs), such as pain sensation and acid-induced neuronal injury. The acid-induced opening of ASICs is transient, because of a rapid desensitization. Neuropeptides containing an Arg-Phe-amide motif affect ASIC desensitization and allow continuous activity of ASICs. In spite of the importance of the sustained ASIC activity during prolonged acidification, the molecular mechanisms of ASIC modulation by neuropeptides is only poorly understood. To identify the FRRFa (Phe-Arg-Arg-Phe-amide) binding site on ASIC1a, we carried out an in silico docking analysis and verified functionally the docking predictions. The docking experiments indicated three possible binding pockets, located (1) in the acidic pocket between the thumb, finger, β-ball and palm domains, (2) in a pocket at the bottom of the thumb domain, and (3) in the central vestibule along with the connected side cavities. Functional measurements of mutant ASIC1a confirmed the importance of residues of the lower palm, which encloses the central vestibule and its side cavities, for the FRRFa effects. The combined docking and functional experiments strongly suggest that FRRFa binds to the central vestibule and its side cavities to change ASIC desensitization.

Indexed as

Acid Sensing Ion ChannelsAnimalsBinding SitesDipeptidesMolecular Docking SimulationNeuropeptidesOocytesProtein BindingProtein DomainsXenopus laevisAcid Sensing Ion ChannelsASIC1 protein, humanDipeptidesNeuropeptidesphenylalanylphenylalanylamide

Identifiers

PMID30796301
PMCPMC6385203
OpenAlexW2916240277

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.