Evidence map›Paper›PMID 30796252›Full record

ArticleScientific reports2019

Changes in microbiome diversity following beta-lactam antibiotic treatment are associated with therapeutic versus subtherapeutic antibiotic exposure in cystic fibrosis.

Andrea Hahn, Hani Fanous, Caroline Jensen, Hollis Chaney, Iman Sami, Geovanny F Perez, Anastassios C Koumbourlis, Stan Louie, James E Bost, John N van den Anker and 3 more

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Modulation of host inflammatory pathways byFrontiers in immunology · 2026
    Article
  2. Article
  3. Review
  4. Observational
  5. Article
  6. Antibiotic resistance in chronic respiratory diseases: from susceptibility testing to the resistome.European respiratory review : an official journal of the European Respiratory Society · 2022
    Review
  7. Article
  8. Importance of beta-lactam pharmacokinetics and pharmacodynamics on the recovery of microbial diversity in the airway of persons with cystic fibrosis.Journal of investigative medicine : the official publication of the American Federation for Clinical Research · 2021
    Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Andrea HahnDivision of Infectious Diseases, Children's National Health System (CNHS), 111 Michigan Ave NW, Washington DC, 20010, USA. alhahn@childrensnational.org.ORCID 0000-0002-5117-0080
Hani FanousDivision of Pulmonary and Sleep Medicine, CNHS, 111 Michigan Ave NW, Washington DC, 20010, USA.
Caroline JensenGWU School of Medicine and Health Sciences, 2300 Eye Street NW, Washington DC, 20037, USA.
Hollis ChaneyDepartment of Pediatrics, George Washington University (GWU) School of Medicine and Health Sciences, 2300 Eye Street NW, Washington DC, 20037, USA.
Iman SamiDepartment of Pediatrics, George Washington University (GWU) School of Medicine and Health Sciences, 2300 Eye Street NW, Washington DC, 20037, USA.
Geovanny F PerezDepartment of Pediatrics, George Washington University (GWU) School of Medicine and Health Sciences, 2300 Eye Street NW, Washington DC, 20037, USA.
Anastassios C KoumbourlisDepartment of Pediatrics, George Washington University (GWU) School of Medicine and Health Sciences, 2300 Eye Street NW, Washington DC, 20037, USA.
Stan LouieDepartment of Clinical Pharmacy, University of Southern California School of Pharmacy, 1985 Zonal Ave, Los Angeles, CA, 90089, USA.
James E BostDivision of Biostatistics and Study Methodology, CNHS, 111 Michigan Ave NW, Washington DC, 20010, USA.
John N van den AnkerDepartment of Pediatrics, George Washington University (GWU) School of Medicine and Health Sciences, 2300 Eye Street NW, Washington DC, 20037, USA.
Robert J FreishtatDepartment of Pediatrics, George Washington University (GWU) School of Medicine and Health Sciences, 2300 Eye Street NW, Washington DC, 20037, USA.
Edith T ZemanickDepartment of Pediatrics, University of Colorado Anschutz Medical Campus, 13123 E. 16th Ave, Aurora, CO, 80045, USA.
Keith A CrandallComputational Biology Institute, GWU, 45085 University Drive, Ashburn, VA, 20147, USA.ORCID 0000-0002-0836-3389

Funding

Clinical and Translational Science Institute at Children's NationalUL1TR000075 · NCATS · CHILDREN'S RESEARCH INSTITUTE · PI GUAY-WOODFORD, LISA MARIE · 2012 to 2015
$13.7M
K12 Career Development Program: Omics of Pediatric Lung Diseases in DCK12HL119994 · NHLBI · CHILDREN'S RESEARCH INSTITUTE · PI FREISHTAT, ROBERT J · 2013 to 2017
$1.3M
NCATS NIH HHS UL1 TR000075NHLBI NIH HHS K12 HL119994NIAID NIH HHS L40 AI107838
6 · The paper itself

Abstract

In persons with cystic fibrosis (CF), decreased airway microbial diversity is associated with lower lung function. Conflicting data exist on the impact of short-term antibiotics for treatment of acute pulmonary exacerbations. However, whether differences in antibiotic exposure impacts airway microbiome changes has not been studied. We hypothesized that subtherapeutic beta-lactam antibiotic exposure, determined by the pharmacokinetics and pharmacodynamics (PK/PD) after intravenous (IV) antibiotic administration, would be associated with different patterns of changes in CF airway microbial diversity. Eligible children were enrolled when well; study assessments were performed around the time of pulmonary exacerbation. Plasma drug concentrations and bacterial minimum inhibitory concentrations (MICs) were used to determine therapeutic versus subtherapeutic beta-lactam antibiotic exposure. Respiratory samples were collected from children, and extracted bacterial DNA was amplified for the V4 region of the 16S rRNA gene. Twenty children experienced 31 APEs during the study; 45% (n = 14) of antibiotic courses were deemed therapeutic. Those in the therapeutic group had more significant decreases in alpha diversity at end of treatment and post-recovery compared to baseline than those in the subtherapeutic group. Therapeutic and subtherapeutic beta-lactam use is associated with different patterns of changes in CF airway microbial diversity following antibiotic administration.

Indexed as

Anti-Bacterial AgentsBacteriabeta-LactamsChildCystic FibrosisDNA, BacterialGenetic VariationHumansMicrobiotaRespiratory SystemRNA, Ribosomal, 16SAnti-Bacterial Agentsbeta-LactamsDNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID30796252
PMCPMC6385179

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.