Evidence map›Paper›PMID 30796162›Full record

ArticleThe Journal of biological chemistry2019

Parkinson's disease-associated mutations in the GTPase domain of LRRK2 impair its nucleotide-dependent conformational dynamics.

Chun-Xiang Wu, Jingling Liao, Yangshin Park, Xylena Reed, Victoria A Engel, Neo C Hoang, Yuichiro Takagi, Steven M Johnson, Mu Wang, Mark Federici and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. LRRK2 and idiopathic Parkinson's disease.Trends in neurosciences · 2022
    Review
  12. Article
  13. Article
  14. The Cell Biology of LRRK2 in Parkinson's Disease.Molecular and cellular biology · 2021
    Review
  15. Allosteric inhibition of LRRK2, where are we now.Biochemical Society transactions · 2020
    Review
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Chun-Xiang WuFrom the Departments of Biochemistry and Molecular Biology, Indianapolis, Indiana 46202; The Stark Neurosciences Institute, Indiana University School of Medicine, Indianapolis, Indiana 46202.
Jingling LiaoFrom the Departments of Biochemistry and Molecular Biology, Indianapolis, Indiana 46202; The Stark Neurosciences Institute, Indiana University School of Medicine, Indianapolis, Indiana 46202; Department of Public Health, Wuhan University of Science and Technology School of Medicine, 430081 Wuhan, China.
Yangshin ParkFrom the Departments of Biochemistry and Molecular Biology, Indianapolis, Indiana 46202; The Stark Neurosciences Institute, Indiana University School of Medicine, Indianapolis, Indiana 46202.
Xylena Reedthe Laboratory of Neurogenetics, National Institutes of Health, Bethesda, Maryland 20892.
Victoria A EngelFrom the Departments of Biochemistry and Molecular Biology, Indianapolis, Indiana 46202; The Stark Neurosciences Institute, Indiana University School of Medicine, Indianapolis, Indiana 46202.
Neo C HoangFrom the Departments of Biochemistry and Molecular Biology, Indianapolis, Indiana 46202; The Stark Neurosciences Institute, Indiana University School of Medicine, Indianapolis, Indiana 46202.
Yuichiro TakagiFrom the Departments of Biochemistry and Molecular Biology, Indianapolis, Indiana 46202.
Steven M JohnsonFrom the Departments of Biochemistry and Molecular Biology, Indianapolis, Indiana 46202.
Mu WangFrom the Departments of Biochemistry and Molecular Biology, Indianapolis, Indiana 46202; the Department of Biological Sciences, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123 China.
Mark FedericiThermoFisher Scientific, Carlsbad, California 92087.
R Jeremy Nicholsthe Department of Pathology, Stanford University, Stanford, California 94305.
Ruslan Sanishvilithe X-ray Science Division, Argonne National Laboratory, Argonne, Illinois 60439.
Mark R Cooksonthe Laboratory of Neurogenetics, National Institutes of Health, Bethesda, Maryland 20892.
Quyen Q HoangFrom the Departments of Biochemistry and Molecular Biology, Indianapolis, Indiana 46202; The Stark Neurosciences Institute, Indiana University School of Medicine, Indianapolis, Indiana 46202; Department of Neurology, Indiana University School of Medicine, Indianapolis, Indiana 46202. Electronic address: qqhoang@iu.edu.
Neurosciences Institute · USNational Institutes of Health · USArgonne National Laboratory · USStanford University · USThermo Fisher Scientific (United States) · USXi’an Jiaotong-Liverpool University · CN

Funding

GTPase function of Leucine rich repeat kinase 2ZIAAG000937 · NIA · NATIONAL INSTITUTE ON AGING · PI COOKSON, MARK · 2010 to 2025
$9.2M
Indiana Medical Scientist/Engineer Training ProgramT32GM077229 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI GASTON, BENJAMIN, HERBERT, BRITTNEY-SHEA · 2008 to 2022
$6.0M
Selective modulation of bacterial chaperonins by targeting novel small molecule binding sitesR01GM120350 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI JOHNSON, STEVEN MICHAEL · 2017 to 2021
$2.3M
Molecular bases of leucine rich repeat kinase 2 activity regulationR01GM115844 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HOANG, QUYEN QUOC, YUE, ZHENYU · 2016 to 2019
$2.2M
Structure and Function of the Parkinson's disease associated protein LRRK2R01GM111639 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI HOANG, QUYEN QUOC · 2015 to 2019
$1.6M
Mechanism of transcription regulation by the MediatorR01GM111695 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI TAKAGI, YUICHIRO · 2015 to 2019
$1.5M
NIGMS NIH HHS R01 GM111639NIGMS NIH HHS R01 GM111695NIGMS NIH HHS R01 GM115844NIGMS NIH HHS R01 GM120350
6 · The paper itself

Abstract

Mutation in leucine-rich repeat kinase 2 (LRRK2) is a common cause of familial Parkinson's disease (PD). Recently, we showed that a disease-associated mutation R1441H rendered the GTPase domain of LRRK2 catalytically less active and thereby trapping it in a more persistently "on" conformation. However, the mechanism involved and characteristics of this on conformation remained unknown. Here, we report that the Ras of complex protein (ROC) domain of LRRK2 exists in a dynamic dimer-monomer equilibrium that is oppositely driven by GDP and GTP binding. We also observed that the PD-associated mutations at residue 1441 impair this dynamic and shift the conformation of ROC to a GTP-bound-like monomeric conformation. Moreover, we show that residue Arg-1441 is critical for regulating the conformational dynamics of ROC. In summary, our results reveal that the PD-associated substitutions at Arg-1441 of LRRK2 alter monomer-dimer dynamics and thereby trap its GTPase domain in an activated state.

Indexed as

Leucine-Rich Repeat Serine-Threonine Protein Kinase-2Mutation, MissenseParkinson DiseaseProtein MultimerizationAmino Acid SubstitutionGuanosine DiphosphateGuanosine TriphosphateHEK293 CellsHumansProtein DomainsGuanosine DiphosphateGuanosine TriphosphateLeucine-Rich Repeat Serine-Threonine Protein Kinase-2LRRK2 protein, humanconformational changeconformational dynamicsdisease mutationenzyme activationGTPasekinaseleucine-rich repeat kinase 2 (LRRK2)molecular dynamicsParkinson diseaseRas of complex proteins (ROC)

Identifiers

PMID30796162
PMCPMC6463707
OpenAlexW2915275908

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.