Evidence map›Paper›PMID 30795541›Full record

ArticleMolecules (Basel, Switzerland)2019

Intensive Distribution of G₂-Quaduplexes in the Pseudorabies Virus Genome and Their Sensitivity to Cations and G-Quadruplex Ligands.

Hui Deng, Bowen Gong, Zhiquan Yang, Zhen Li, Huan Zhou, Yashu Zhang, Xiaohui Niu, Sisi Liu, Dengguo Wei

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. GRNA biology · 2020
    Article
  5. Journal of porphyrins and phthalocyanines · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Hui DengLaboratory of Medicinal Biophysical Chemistry, College of Science, Huazhong Agricultural University, Wuhan 430070, China. denghui0923@163.com.
Bowen GongLaboratory of Medicinal Biophysical Chemistry, College of Science, Huazhong Agricultural University, Wuhan 430070, China. night@webmail.hzau.edu.cn.
Zhiquan YangHubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China. yang_zq@foxmail.com.
Zhen LiLaboratory of Medicinal Biophysical Chemistry, College of Science, Huazhong Agricultural University, Wuhan 430070, China. lizhen5a@163.com.
Huan ZhouLaboratory of Medicinal Biophysical Chemistry, College of Science, Huazhong Agricultural University, Wuhan 430070, China. zhouhuan@webmail.hzau.edu.cn.
Yashu ZhangLaboratory of Medicinal Biophysical Chemistry, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China. yashu@webmail.hzau.edu.cn.
Xiaohui NiuHubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China. niuxiaoh@126.com.
Sisi LiuLaboratory of Medicinal Biophysical Chemistry, College of Science, Huazhong Agricultural University, Wuhan 430070, China. liusisi@mail.hzau.edu.cn.ORCID 0000-0002-6814-134X
Dengguo WeiLaboratory of Medicinal Biophysical Chemistry, College of Science, Huazhong Agricultural University, Wuhan 430070, China. dgwei@mail.hzau.edu.cn.ORCID 0000-0001-9923-789X
Huazhong Agricultural University · CN

Funding

Fundamental Research Funds for the Central Universities 2662015QD046Huazhong Agricultural University Scientific & Technological Self-innovation Foundation 2015RC013, 2662017PY113, 2662015PY208Hubei Provincial Natural Science Foundation of China 2017CFB233National Natural Science Foundation of China 31672558, 21502060, 21732002, 31701791Open fund of The State Key Laboratory of Bio-organic and Natural Products Chemistry, Chinese Academy of Sciences SKLBNPC16343
6 · The paper itself

Abstract

Guanine-rich sequences in the genomes of herpesviruses can fold into G-quadruplexes. Compared with the widely-studied G₃-quadruplexes, the dynamic G₂-quadruplexes are more sensitive to the cell microenvironment, but they attract less attention. Pseudorabies virus (PRV) is the model species for the study of the latency and reactivation of herpesvirus in the nervous system. A total of 1722 G₂-PQSs and 205 G₃-PQSs without overlap were identified in the PRV genome. Twelve G₂-PQSs from the CDS region exhibited high conservation in the genomes of the

Indexed as

Gene Expression Regulation, ViralGenome, Viral3' Untranslated Regions5' Untranslated RegionsAcridinesAminoquinolinesAnimalsCattleCell LineComputational BiologyDNA HelicasesDNA PrimaseDNA, ViralEpithelial CellsG-QuadruplexesHEK293 Cells3' Untranslated Regions5' Untranslated RegionsAcridinesAminoquinolinesBRACO-19DNA HelicasesDNA PrimaseDNA, Viralhelicase-primase, Human herpesvirus 1LigandsMesoporphyrinsN-methylmesoporphyrin IXPicolinic AcidsProtein IsoformspyridostatinViral ProteinsalphaherpesvirusesgenomeG-quadruplexG-quadruplex ligandnucleic acids conformationpseudorabies virusregulatory element

Identifiers

PMID30795541
PMCPMC6412908
OpenAlexW2915702539

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.