Evidence map›Paper›PMID 30794875›Full record

ArticleAnaerobe2019

Clostridioides difficile ribotypes isolated from domestic environment and from patients in Bangladesh.

Mohammad Aminul Islam, Nayel D Kabir, M Moniruzzaman, Khurshida Begum, Dilruba Ahmed, A S G Faruque, Kevin W Garey, M Jahangir Alam

Open access · greenAbstract read
In one paragraph

Article in Anaerobe, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 2 pooled it
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 2 syntheses or guidelines pooled it, 8 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Mohammad Aminul IslamLaboratory Sciences and Services Division (LSSD), International Centre for Diarrhoeal Disease Research, (icddr,b), Bangladesh; Paul G. Allen School for Global Animal Health, Washington State Univerisity, Pullman, WA, USA. Electronic address: maislam@icddrb.org.
Nayel D KabirLaboratory Sciences and Services Division (LSSD), International Centre for Diarrhoeal Disease Research, (icddr,b), Bangladesh.
M MoniruzzamanLaboratory Sciences and Services Division (LSSD), International Centre for Diarrhoeal Disease Research, (icddr,b), Bangladesh.
Khurshida BegumUniversity of Houston College of Pharmacy, Houston, TX, USA.
Dilruba AhmedLaboratory Sciences and Services Division (LSSD), International Centre for Diarrhoeal Disease Research, (icddr,b), Bangladesh.
A S G FaruqueNutrition and Clinical Sciences Division (NCSD), International Centre for Diarrhoeal Disease Research, (icddr,b), Bangladesh.
Kevin W GareyUniversity of Houston College of Pharmacy, Houston, TX, USA.
M Jahangir AlamUniversity of Houston College of Pharmacy, Houston, TX, USA.
International Centre for Diarrhoeal Disease Research · BDUniversity of Houston · US

Funding

Decoding Antibiotic-induced Susceptibility to Clostridium difficile InfectionU01AI124290 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI BRITTON, ROBERT A, GAREY, KEVIN W · 2016 to 2020
$7.9M
NIAID NIH HHS U01 AI124290
6 · The paper itself

Abstract

Clostridioides difficile infection (CDI) is an emerging but often understudied infectious disease in developing countries. This study was aimed to isolate and characterize C. difficile from shoe sole swabs and diarrheal patient's stool samples in Bangladesh. We collected 94 shoe sole swabs samples from urban communities in Dhaka and 208 diarrheal stool samples from hospitalized patients over a period of 4 months. Samples were incubated anaerobically for C. difficile growth, confirmed toxigenic, and PCR-ribotyped. Eleven of 94 (11.7%) shoe sole swabs and 4 of 208 (1.9%) stool samples were culture positive of which 9 shoe sole isolates were toxigenic. Six PCR ribotypes from the 9 toxigenic isolates were identified with ribotype F014-020 being the most common (n = 4; 44%). The recently identified ribotype 106 strain was also identified. To the best of our knowledge, this is the first report of C. difficile culture, isolation and characterization from environmental sources in Bangladesh.

Indexed as

Environmental MicrobiologyRibotypingBacterial ToxinsBangladeshClostridioides difficileClostridium InfectionsDiarrheaFecesHumansPolymerase Chain ReactionUrban PopulationBacterial ToxinsClostridiodes difficileDhakaDiarrheaFluorescent-ribotypingShoe soleToxins

Identifiers

PMID30794875
PMCPMC6475596
OpenAlexW2916698463

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.