Evidence map›Paper›PMID 30794538›Full record

ArticlePloS one2019

Mechanism and resistance for antimycobacterial activity of a fluoroquinophenoxazine compound.

Pamela K Garcia, Thirunavukkarasu Annamalai, Wenjie Wang, Raven S Bell, Duc Le, Paula Martin Pancorbo, Sabah Sikandar, Ahmed Seddek, Xufen Yu, Dianqing Sun and 4 more

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Small Molecule Inhibitors ofInternational journal of molecular sciences · 2024
    Article
  7. Article
  8. Review
  9. Review
  10. Biofilms of the non-tuberculousCell surface (Amsterdam, Netherlands) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Pamela K GarciaBiomolecular Sciences Institute, Florida International University, Miami, Florida, United States of America.
Thirunavukkarasu AnnamalaiBiomolecular Sciences Institute, Florida International University, Miami, Florida, United States of America.
Wenjie WangBiomolecular Sciences Institute, Florida International University, Miami, Florida, United States of America.
Raven S BellDepartment of Chemistry & Biochemistry, Florida International University, Miami, Florida, United States of America.
Duc LeDepartment of Chemistry & Biochemistry, Florida International University, Miami, Florida, United States of America.ORCID 0000-0003-4402-3186
Paula Martin PancorboBiomolecular Sciences Institute, Florida International University, Miami, Florida, United States of America.
Sabah SikandarBiomolecular Sciences Institute, Florida International University, Miami, Florida, United States of America.
Ahmed SeddekBiomolecular Sciences Institute, Florida International University, Miami, Florida, United States of America.
Xufen YuDepartment of Pharmaceutical Sciences, The Daniel K. Inouye College of Pharmacy, University of Hawaii at Hilo, Hilo, Hawaii, United States of America.
Dianqing SunDepartment of Pharmaceutical Sciences, The Daniel K. Inouye College of Pharmacy, University of Hawaii at Hilo, Hilo, Hawaii, United States of America.ORCID 0000-0001-7330-1742
Anne-Catrin UhlemannDivision of Infectious Diseases, Columbia University Medical Center, New York, New York, United States of America.
Purushottam B TiwariDepartment of Oncology, School of Medicine, Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington DC, United States of America.
Fenfei LengBiomolecular Sciences Institute, Florida International University, Miami, Florida, United States of America.
Yuk-Ching Tse-DinhBiomolecular Sciences Institute, Florida International University, Miami, Florida, United States of America.ORCID 0000-0002-5616-5176

Funding

Tissue Culture Shared ResourceP30CA051008 · NCI · GEORGETOWN UNIVERSITY · PI Louis M Weiner · 1990 to 2026
$71.5M
UH Hilo COP A&RP20GM103466 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI HELEN C TURNER · 2012 to 2026
$60.3M
Bacterial cell killing topoisomerase I--DNA lesionR01AI069313 · NIAID · NEW YORK MEDICAL COLLEGE · PI TSE-DINH, YUK-CHING · 2006 to 2014
$3.4M
Targeting transcription-coupled DNA supercoiling for discovering antibiotics against bacterial DNA gyraseR21AI125973 · NIAID · FLORIDA INTERNATIONAL UNIVERSITY · PI LENG, FENFEI · 2017 to 2018
$478k
NCI NIH HHS P30 CA051008NIAID NIH HHS R01 AI069313NIAID NIH HHS R21 AI125973NIGMS NIH HHS P20 GM103466
6 · The paper itself

Abstract

We have previously reported the inhibition of bacterial topoisomerase I activity by a fluoroquinophenoxazine compound (FP-11g) with a 6-bipiperidinyl lipophilic side chain that exhibited promising antituberculosis activity (MIC = 2.5 μM against Mycobacterium tuberculosis, SI = 9.8). Here, we found that the compound is bactericidal towards Mycobacterium smegmatis, resulting in greater than 5 Log10 reduction in colony-forming units [cfu]/mL following a 10 h incubation at 1.25 μM (4X MIC) concentration. Growth inhibition (MIC = 50 μM) and reduction in cfu could also be observed against a clinical isolate of Mycobacterium abscessus. Stepwise isolation of resistant mutants of M. smegmatis was conducted to explore the mechanism of resistance. Mutations in the resistant isolates were identified by direct comparison of whole-genome sequencing data from mutant and wild-type isolates. These include mutations in genes likely to affect the entry and retention of the compound. FP-11g inhibits Mtb topoisomerase I and Mtb gyrase with IC50 of 0.24 and 27 μM, respectively. Biophysical analysis showed that FP-11g binds DNA as an intercalator but the IC50 for inhibition of Mtb topoisomerase I activity is >10 fold lower than the compound concentrations required for producing negatively supercoiled DNA during ligation of nicked circular DNA. Thus, the DNA-binding property of FP-11g may contribute to its antimycobacterial mechanism, but that alone cannot account for the observed inhibition of Mtb topoisomerase I.

Indexed as

Anti-Bacterial AgentsAntitubercular AgentsDrug Resistance, MicrobialFluoroquinolonesHumansMicrobial Sensitivity TestsMycobacteriumMycobacterium abscessusMycobacterium Infections, NontuberculousMycobacterium smegmatisMycobacterium tuberculosisOxazinesTuberculosis, Multidrug-ResistantTuberculosis, PulmonaryWhole Genome SequencingAnti-Bacterial AgentsAntitubercular AgentsFluoroquinolonesOxazinesphenoxazine

Identifiers

PMID30794538
PMCPMC6386362

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.