Evidence map›Paper›PMID 30793504›Full record

ArticleMicrobiologyOpen2019

Production of extracellular vesicles with light-induced proton pump activity by proteorhodopsin-containing marine bacteria.

Yong Min Kwon, Ajit Kumar Patra, Hiroshi Xavier Chiura, Sang-Jin Kim

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Yong Min KwonNational Marine Biodiversity Institute of Korea, Seocheon, Korea.ORCID 0000-0001-9989-6190
Ajit Kumar PatraNational Marine Biodiversity Institute of Korea, Seocheon, Korea.
Hiroshi Xavier ChiuraGenetics Research Group, Centre for Earth Surface System Dynamics, Atmosphere and Ocean Research Institute, the University of Tokyo, Kashiwa, Chiba, Japan.
Sang-Jin KimMarine Biotechnology Research Center, Korea Institute of Ocean Science & Technology, Pusan, Korea.
Marine Biodiversity Institute of Korea · KRKorea Institute of Ocean Science and Technology · KRTokyo University of Agriculture · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The production and release of extracellular vesicles (EVs) is a common process occurring in various types of bacteria. However, little is known regarding the functions of EVs derived from marine bacteria. We observed that during cell growth, Sediminicola sp. YIK13, a proteorhodopsin (PR)-containing marine flavobacterium, produces EVs (S13EVs). Transmission electron microscopy showed that Sediminicola sp. YIK13 released two spherical vesicle types, with mono- and/or bi-layered membranes, in the culture. Interestingly, the S13EVs have an orange pigment, indicating the presence of putative carotenoid and PR pigments ascribed to the parental cells. The S13EVs demonstrated the same PR-derived absorption peak spectrum and light-induced proton pump activity as the parental cells. Western blot (immunoblot) analysis of the S13EVs revealed the presence of PR. We confirmed the 16S rRNA gene, pro gene, and genes required for chromophore retinal synthesis, namely blh and crtI, in the DNA packaged into these vesicles. In addition, by metagenomic sequencing, we found microbial rhodopsin-related genes in vesicles derived from natural aquatic environments. Our results suggest that EVs as well potentially pursue horizontal gene transfer of diverse microbial rhodopsin genes in marine ecosystems.

Indexed as

LightAquatic OrganismsCluster AnalysisDNA, BacterialDNA, RibosomalExtracellular VesiclesFlavobacteriaceaeGene Expression Regulation, BacterialMetabolic Networks and PathwaysMicroscopy, Electron, TransmissionPhylogenyProton PumpsRhodopsins, MicrobialRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialDNA, RibosomalproteorhodopsinProton PumpsRhodopsins, MicrobialRNA, Ribosomal, 16Sextracellular vesiclesflavobacterialight-induced proton pump activitymetagenomicsproteorhodopsinS13EVs

Identifiers

PMID30793504
PMCPMC6692529
OpenAlexW2917560411

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.