Evidence map›Paper›PMID 30793472›Full record

ArticleAging cell2020

Age-dependent DNA methylation patterns on the Y chromosome in elderly males.

Jesper B Lund, Shuxia Li, Kaare Christensen, Jonas Mengel-From, Mette Soerensen, Riccardo E Marioni, John Starr, Alison Pattie, Ian J Deary, Jan Baumbach and 1 more

Open access · goldAbstract read
In one paragraph

Article in Aging cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 2 pooled it
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 2 syntheses or guidelines pooled it, 43 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Molecular Age Estimation: Current Perspectives and Future Considerations.International journal of molecular sciences · 2026
    Review
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  10. Article
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  13. Article
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  15. Satellite DNAs and human sex chromosome variation.Seminars in cell & developmental biology · 2022
    Review
  16. Review
  17. Article
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Jesper B LundEpidemiology and Biostatistics, Department of Public Health, University of Southern Denmark, Odense, Denmark.ORCID 0000-0001-9483-1603
Shuxia LiUnit of Human Genetics, Department of Clinical Research, University of Southern Denmark, Odense, Denmark.ORCID 0000-0001-8095-3175
Kaare ChristensenEpidemiology and Biostatistics, Department of Public Health, University of Southern Denmark, Odense, Denmark.
Jonas Mengel-FromEpidemiology and Biostatistics, Department of Public Health, University of Southern Denmark, Odense, Denmark.
Mette SoerensenEpidemiology and Biostatistics, Department of Public Health, University of Southern Denmark, Odense, Denmark.
Riccardo E MarioniCentre for Genomic and Experimental Medicine, University of Edinburgh, Edinburgh, UK.
John StarrCentre for Cognitive Aging and Cognitive Epidemiology, University of Edinburgh, Edinburgh, UK.
Alison PattieDepartment of Psychology, University of Edinburgh, Edinburgh, UK.
Ian J DearyCentre for Cognitive Aging and Cognitive Epidemiology, University of Edinburgh, Edinburgh, UK.
Jan BaumbachChair of Experimental Bioinformatics, TUM School of Life Sciences Weihenstephan, Technical University of Munich, Munich, Germany.
Qihua TanEpidemiology and Biostatistics, Department of Public Health, University of Southern Denmark, Odense, Denmark.ORCID 0000-0003-3194-0030
University of Southern Denmark · DKAlzheimer Scotland · GBTechnical University of Munich · DEUniversity of Edinburgh · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F019394/1Medical Research Council MR/K026992/1Wellcome Trust
6 · The paper itself

Abstract

The Y chromosome, a sex chromosome that only exists in males, has been ignored in traditional epigenetic association studies for multiple reasons. However, sex differences in aging-related phenotypes and mortality could suggest a critical role of the sex chromosomes in the aging process. We obtained blood-based DNA methylation data on the Y chromosome for 624 men from four cohorts and performed a chromosome-wide epigenetic association analysis to detect Y-linked CpGs differentially methylated over age and cross-validated the significant CpGs in the four cohorts. We identified 40-219 significant CpG sites (false discovery rate <0.05) with >82% of them hypermethylated with increasing age, which is in strong contrast to the patterns reported on the autosomal chromosomes. Comparing the rate of change in the Y-linked DNA methylation across cohorts that represent different age intervals revealed a trend of acceleration in DNA methylation with increasing age. The age-dependent DNA methylation patterns on the Y chromosome were further examined for their association with all-cause mortality with results suggesting that the predominant pattern of age-related hypermethylation on the Y chromosome is associated with reduced risk of death.

Indexed as

CpG IslandsDNA MethylationAgedAged, 80 and overAgingChromosomes, Human, YDatabases, GeneticEpigenesis, GeneticGenome-Wide Association StudyHumansMaleMiddle AgedMortalityRegression AnalysisRisk Factorsage-dependent patternsagingDNA methylationmortalityY chromosome

Identifiers

PMID30793472
PMCPMC6996942
OpenAlexW2915637401

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.