Evidence map›Paper›PMID 30792519›Full record

ArticleThe Journal of antibiotics2019

Novel 5-substituted derivatives of 2'-deoxy-6-azauridine with antibacterial activity.

Sergey D Negrya, Olga V Efremenkova, Pavel N Solyev, Vladimir O Chekhov, Maxim A Ivanov, Irina G Sumarukova, Inna L Karpenko, Sergey N Kochetkov, Liudmila A Alexandrova

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Article in The Journal of antibiotics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Calculated pThe journal of physical chemistry. A · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sergey D NegryaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, 32 Vavilova St., 119991, Moscow, Russia.
Olga V EfremenkovaGause Institute of New Antibiotics, 11 Bolshaya Pirogovskaya St., 119021, Moscow, Russia.ORCID http://orcid.org/0000-0003-3131-1031
Pavel N SolyevEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, 32 Vavilova St., 119991, Moscow, Russia.ORCID http://orcid.org/0000-0002-5546-4975
Vladimir O ChekhovEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, 32 Vavilova St., 119991, Moscow, Russia.
Maxim A IvanovEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, 32 Vavilova St., 119991, Moscow, Russia.
Irina G SumarukovaGause Institute of New Antibiotics, 11 Bolshaya Pirogovskaya St., 119021, Moscow, Russia.ORCID http://orcid.org/0000-0001-7750-7983
Inna L KarpenkoEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, 32 Vavilova St., 119991, Moscow, Russia.ORCID http://orcid.org/0000-0001-9849-0447
Sergey N KochetkovEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, 32 Vavilova St., 119991, Moscow, Russia.ORCID http://orcid.org/0000-0002-7443-6961
Liudmila A AlexandrovaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, 32 Vavilova St., 119991, Moscow, Russia. ala2004_07@mail.ru.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The emergence of new drug-resistant strains of bacteria necessitates the development of principally new antibacterial agents. One of the novel classes of antibacterial agents is nucleoside analogs. We have developed a fast and simple one-pot method for preparation of α- and β-anomers of 5-modified 6-aza- and 2-thio-6-aza-2'-deoxyuridine derivatives in high yields. 2-Thio derivatives demonstrated moderate activity against Mycobacterium smegmatis (MIC = 0.2-0.8 mM), Staphylococcus aureus (MIC = 0.03-0.9 mM) and some other Gram-positive bacteria. 2'-Deoxy-2-thio-5-phenyl-6-azauridine (2b) effectively suppressed the growth of Gram-negative bacteria Pseudomonas aeruginosa ATCC 27853 (MIC = 0.03 mM)-the one that causes diseases difficult to treat due to high resistance to antibiotics. 5'-Monophosphates of compounds 2a, b and 3a, b were docked into a binding site of Mycobacterium tuberculosis flavin-dependent thymidylate synthase (ThyX) enzyme. The molecular modeling demonstrates the possibility of binding of the 5-modified 2-thio-6-aza-2'-deoxyuridine 5'-monophosphates within the active site of the enzyme and thereby inhibiting the growth of the bacteria.

Indexed as

AnimalsAnti-Bacterial AgentsAzauridineCatalytic DomainCell LineCell SurvivalHumansMicrobial Sensitivity TestsMolecular Docking SimulationMolecular StructureMycobacterium smegmatisMycobacterium tuberculosisPseudomonas aeruginosaStaphylococcus aureusThymidylate SynthaseAnti-Bacterial AgentsAzauridineThymidylate Synthase

Identifiers

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.