Evidence map›Paper›PMID 30792433›Full record

ArticleScientific reports2019

Comparative transcriptome analysis reveals differentially expressed genes related to the tissue-specific accumulation of anthocyanins in pericarp and aleurone layer for maize.

Tingchun Li, Wei Zhang, Huaying Yang, Qing Dong, Jie Ren, Honghong Fan, Xin Zhang, Yingbing Zhou

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In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
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  7. Article
  8. Article
  9. Review
  10. Underlying Biochemical and Molecular Mechanisms for Seed Germination.International journal of molecular sciences · 2022
    Review
  11. Article
  12. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Tingchun Li *Corn Research Center, Tobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei, 230031, P. R. China.ORCID http://orcid.org/0000-0002-4567-7926
Wei Zhang *Corn Research Center, Tobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei, 230031, P. R. China.
Huaying YangCorn Research Center, Tobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei, 230031, P. R. China.
Qing DongCorn Research Center, Tobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei, 230031, P. R. China.
Jie RenCorn Research Center, Tobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei, 230031, P. R. China.
Honghong FanSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, P. R. China. hhfan0551@126.com.
Xin ZhangSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, P. R. China. xinzhang@ahau.edu.cn.
Yingbing ZhouCorn Research Center, Tobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei, 230031, P. R. China. ybzhou99@126.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purple corn is a rich source of anthocyanins. In the experiment, two anthocyanins-enriched purple corn lines Ha0414 and Ha6130 were identified. The anthocyanins were respectively accumulated in the pericarp of Ha0414 and the aleurone layer of Ha6130 with different composition and content. Transcriptome analysis of the two tissues in both lines identified 16 and 14 differentially expressed genes belonging to anthocyanin metabolism pathway in pericarp and the aleurone layer, individually. Of these genes, two genes encoding 2-oxoglutarate (2OG) and Fe (II)-dependent oxygenase superfamily proteins, and one gene annotated as UDP-glycosyltransferase superfamily protein exhibited increased transcript abundance in both the colored pericarp and aleurone layer. Otherwise, one gene annotated as flavonoid 3', 5'-hydroxylase, and another gene encoding flavonoid 3'-monooxygenase displayed increased transcript abundance in the aleurone layer of Ha6130. Moreover, 36 transcription factors were identified with increased transcript abundance in the pericarp of Ha0414, such as bHLH transcription factors, WRKY transcription factors, and HB transcription factors. And 79 transcription factors were isolated with an increased expression level in the aleurone layer of Ha6130, including MYB transcription factors, MYB-related transcription factors, and bHLH transcription factors. These genes expression may result in the tissue-specific accumulation of anthocyanins in pericarp and aleurone layer.

Indexed as

AnthocyaninsGene Expression ProfilingGene Expression Regulation, PlantGlycosyltransferasesHigh-Throughput Nucleotide SequencingMixed Function OxygenasesOrgan SpecificityPlant ProteinsSequence Analysis, RNATranscription FactorsZea maysaleuroneAnthocyaninsGlycosyltransferasesMixed Function OxygenasesPlant ProteinsTranscription Factors

Identifiers

PMID30792433
PMCPMC6384890

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.