Evidence map›Paper›PMID 30792395›Full record

ArticleNature communications2019

Auxin Response Factors promote organogenesis by chromatin-mediated repression of the pluripotency gene SHOOTMERISTEMLESS.

Yuhee Chung, Yang Zhu, Miin-Feng Wu, Sara Simonini, Andre Kuhn, Alma Armenta-Medina, Run Jin, Lars Østergaard, C Stewart Gillmor, Doris Wagner

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
15.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 106 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. "Bud to bloom"-hormonal coordination in floral initiation.Plant biology (Stuttgart, Germany) · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. The Auxin Response FactorPlants (Basel, Switzerland) · 2025
    Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. ThePhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
  18. Article
  19. Article
  20. A non-canonicalFrontiers in plant science · 2024
    Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 4 countries.

Yuhee ChungDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Yang ZhuDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.ORCID http://orcid.org/0000-0002-0823-6929
Miin-Feng WuDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Sara SimoniniCrop Genetics Dept, John Innes Centre, Norwich Research Park, NR4 7UH, Norwich, Norfolk, UK.
Andre KuhnCrop Genetics Dept, John Innes Centre, Norwich Research Park, NR4 7UH, Norwich, Norfolk, UK.
Alma Armenta-MedinaLaboratorio Nacional de Genómica para la Biodiversidad (Langebio), Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Irapuato C.P., 36824, Guanajuato, Mexico.
Run JinDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Lars ØstergaardCrop Genetics Dept, John Innes Centre, Norwich Research Park, NR4 7UH, Norwich, Norfolk, UK.
C Stewart GillmorLaboratorio Nacional de Genómica para la Biodiversidad (Langebio), Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Irapuato C.P., 36824, Guanajuato, Mexico.
Doris WagnerDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA. wagnerdo@sas.upenn.edu.ORCID http://orcid.org/0000-0003-4656-2490
University of Pennsylvania · USJohn Innes Centre · GBCentro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional · MXBayer (United States) · US

Funding

Biotechnology and Biological Sciences Research Council BBS/E/J/00000613Biotechnology and Biological Sciences Research Council BBS/E/J/000PR9773Biotechnology and Biological Sciences Research Council BBS/E/J/000PR9788
6 · The paper itself

Abstract

Specification of new organs from transit amplifying cells is critical for higher eukaryote development. In plants, a central stem cell pool maintained by the pluripotency factor SHOOTMERISTEMLESS (STM), is surrounded by transit amplifying cells competent to respond to auxin hormone maxima by giving rise to new organs. Auxin triggers flower initiation through Auxin Response Factor (ARF) MONOPTEROS (MP) and recruitment of chromatin remodelers to activate genes promoting floral fate. The contribution of gene repression to reproductive primordium initiation is poorly understood. Here we show that downregulation of the STM pluripotency gene promotes initiation of flowers and uncover the mechanism for STM silencing. The ARFs ETTIN (ETT) and ARF4 promote organogenesis at the reproductive shoot apex in parallel with MP via histone-deacetylation mediated transcriptional silencing of STM. ETT and ARF4 directly repress STM, while MP acts indirectly, through its target FILAMENTOUS FLOWER (FIL). Our data suggest that - as in animals- downregulation of the pluripotency program is important for organogenesis in plants.

Indexed as

ArabidopsisArabidopsis ProteinsChromatin Assembly and DisassemblyDNA-Binding ProteinsFlowersGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGene SilencingGenes, PlantHomeodomain ProteinsIndoleacetic AcidsNuclear ProteinsOrganogenesis, PlantPlant Growth RegulatorsPlants, Genetically ModifiedTranscription FactorsArabidopsis ProteinsARF4 protein, ArabidopsisDNA-Binding ProteinsETT protein, ArabidopsisHomeodomain ProteinsIndoleacetic AcidsNuclear ProteinsPlant Growth RegulatorsSTM protein, ArabidopsisTranscription Factors

Identifiers

PMID30792395
PMCPMC6385194
OpenAlexW2915350210

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.