Evidence map›Paper›PMID 30792304›Full record

ArticleScience (New York, N.Y.)2019

Hachimoji DNA and RNA: A genetic system with eight building blocks.

Shuichi Hoshika, Nicole A Leal, Myong-Jung Kim, Myong-Sang Kim, Nilesh B Karalkar, Hyo-Joong Kim, Alison M Bates, Norman E Watkins, Holly A SantaLucia, Adam J Meyer and 6 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 182 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
182citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

182 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  20. Rethinking governance of synthetic cells.Frontiers in bioengineering and biotechnology · 2026
    Article

122 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Shuichi HoshikaFirebird Biomolecular Sciences LLC, 13709 Progress Boulevard, No. 17, Alachua, FL 32615, USA.ORCID 0000-0001-9128-1183
Nicole A LealFirebird Biomolecular Sciences LLC, 13709 Progress Boulevard, No. 17, Alachua, FL 32615, USA.ORCID 0000-0001-6953-4519
Myong-Jung KimFirebird Biomolecular Sciences LLC, 13709 Progress Boulevard, No. 17, Alachua, FL 32615, USA.ORCID 0000-0002-4110-1495
Myong-Sang KimFirebird Biomolecular Sciences LLC, 13709 Progress Boulevard, No. 17, Alachua, FL 32615, USA.ORCID 0000-0002-3028-4281
Nilesh B KaralkarFirebird Biomolecular Sciences LLC, 13709 Progress Boulevard, No. 17, Alachua, FL 32615, USA.ORCID 0000-0002-3796-9267
Hyo-Joong KimFirebird Biomolecular Sciences LLC, 13709 Progress Boulevard, No. 17, Alachua, FL 32615, USA.ORCID 0000-0003-3934-8963
Alison M BatesDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202, USA.ORCID 0000-0001-5567-0624
Norman E WatkinsDNA Software Inc., Ann Arbor, MI 48104, USA.ORCID 0000-0001-8193-3221
Holly A SantaLuciaDNA Software Inc., Ann Arbor, MI 48104, USA.ORCID 0000-0002-8285-2455
Adam J MeyerCenter for Systems and Synthetic Biology, University of Texas, Austin, TX 78703, USA.ORCID 0000-0001-5455-3418
Saurja DasGuptaDepartment of Biochemistry and Molecular Biology and Department of Chemistry, University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0002-9064-9131
Joseph A PiccirilliDepartment of Biochemistry and Molecular Biology and Department of Chemistry, University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0002-0541-6270
Andrew D EllingtonCenter for Systems and Synthetic Biology, University of Texas, Austin, TX 78703, USA.ORCID 0000-0001-6246-5338
John SantaLuciaDNA Software Inc., Ann Arbor, MI 48104, USA.ORCID 0000-0002-2612-631X
Millie M GeorgiadisDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202, USA.ORCID 0000-0003-2976-4576
Steven A BennerFirebird Biomolecular Sciences LLC, 13709 Progress Boulevard, No. 17, Alachua, FL 32615, USA. manuscripts@ffame.org.ORCID 0000-0002-3318-9917

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Transforming Life Sciences: Artificial LifeR01GM128186 · NIGMS · FOUNDATION FOR APPLIED MOLECULAR EVOLUTN · PI BENNER, STEVEN A · 2017 to 2021
$3.4M
CHAPERONE-ASSISTED RNA CRYSTALLOGRAPHY - Resubmission 01R01GM102489 · NIGMS · UNIVERSITY OF CHICAGO · PI PICCIRILLI, JOSEPH ANTHONY · 2013 to 2021
$2.9M
Reagents to Create Large DNA Constructs in One Assembly StepR41GM119494 · NIGMS · FIREBIRD BIOMOLECULAR SCIENCES, LLC · PI BENNER, STEVEN A, HOSHIKA, SHUICHI · 2016 to 2016
$150k
NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM102489NIGMS NIH HHS R01 GM128186NIGMS NIH HHS R41 GM119494
6 · The paper itself

Abstract

We report DNA- and RNA-like systems built from eight nucleotide "letters" (hence the name "hachimoji") that form four orthogonal pairs. These synthetic systems meet the structural requirements needed to support Darwinian evolution, including a polyelectrolyte backbone, predictable thermodynamic stability, and stereoregular building blocks that fit a Schrödinger aperiodic crystal. Measured thermodynamic parameters predict the stability of hachimoji duplexes, allowing hachimoji DNA to increase the information density of natural terran DNA. Three crystal structures show that the synthetic building blocks do not perturb the aperiodic crystal seen in the DNA double helix. Hachimoji DNA was then transcribed to give hachimoji RNA in the form of a functioning fluorescent hachimoji aptamer. These results expand the scope of molecular structures that might support life, including life throughout the cosmos.

Indexed as

Base PairingCrystallographyDNAFluorescenceNucleic Acid ConformationNucleotidesPolyelectrolytesRNASynthetic BiologyThermodynamicsDNANucleotidesPolyelectrolytesRNA

Identifiers

PMID30792304
PMCPMC6413494

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.