Evidence map›Paper›PMID 30792183›Full record

ArticleJournal of lipid research2019

Use of isotopically labeled substrates reveals kinetic differences between human and bacterial serine palmitoyltransferase.

Peter J Harrison, Kenneth Gable, Niranjanakumari Somashekarappa, Van Kelly, David J Clarke, James H Naismith, Teresa M Dunn, Dominic J Campopiano

Erratum issuedOpen access · hybridAbstract readComparative Study
In one paragraph

Article in Journal of lipid research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Journal of dental research · 2020
    Article
  8. Monitoring the SphingolipidFrontiers in cell and developmental biology · 2019
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Peter J HarrisonEastChem School of Chemistry, University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom; Division of Structural Biology Wellcome Trust Centre for Human Genomics, Oxford OX3 7BN, United Kingdom; Research Complex at Harwell Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom.
Kenneth GableDepartment of Biochemistry and Molecular Biology, Uniformed Services University, Bethesda, MD 20814-4799.
Niranjanakumari SomashekarappaDepartment of Biochemistry and Molecular Biology, Uniformed Services University, Bethesda, MD 20814-4799.
Van KellyEastChem School of Chemistry, University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom.
David J ClarkeEastChem School of Chemistry, University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom.
James H NaismithDivision of Structural Biology Wellcome Trust Centre for Human Genomics, Oxford OX3 7BN, United Kingdom; Research Complex at Harwell Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom; The Rosalind Franklin Institute Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom.
Teresa M DunnDepartment of Biochemistry and Molecular Biology, Uniformed Services University, Bethesda, MD 20814-4799.
Dominic J CampopianoEastChem School of Chemistry, University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom. Electronic address: Dominic.Campopiano@ed.ac.uk.
Uniformed Services University of the Health Sciences · USUniversity of Edinburgh · GBRutherford Appleton Laboratory · GB

Funding

Biotechnology and Biological Sciences Research Council BB/M003493/1
6 · The paper itself

Abstract

Isotope labels are frequently used tools to track metabolites through complex biochemical pathways and to discern the mechanisms of enzyme-catalyzed reactions. Isotopically labeled l-serine is often used to monitor the activity of the first enzyme in sphingolipid biosynthesis, serine palmitoyltransferase (SPT), as well as labeling downstream cellular metabolites. Intrigued by the effect that isotope labels may be having on SPT catalysis, we characterized the impact of different l-serine isotopologues on the catalytic activity of recombinant SPT isozymes from humans and the bacterium

Indexed as

HumansIsotope LabelingKineticsMicrosomesSerineSerine C-PalmitoyltransferaseSphingomonasSubstrate SpecificitySerineSerine C-Palmitoyltransferasebiosynthesismechanismmembrane proteinregulationsphingolipid

Identifiers

PMID30792183
PMCPMC6495160
OpenAlexW2917128633

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.