Evidence map›Paper›PMID 30787417›Full record

ArticleScientific reports2019

Viral metagenomics revealed novel betatorquevirus species in pediatric inpatients with encephalitis/meningoencephalitis from Ghana.

Daniel Eibach, Benedikt Hogan, Nimako Sarpong, Doris Winter, Nicole S Struck, Yaw Adu-Sarkodie, Ellis Owusu-Dabo, Jonas Schmidt-Chanasit, Jürgen May, Daniel Cadar

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Anellovirus species in the serum of acute febrile patients from Mato Grosso, central Western Brazil, 2019.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
    Article
  4. Article
  5. Virus evolution · 2025
    Article
  6. Article
  7. Genomic characterization ofMicrobiology resource announcements · 2024
    Article
  8. International journal of molecular sciences · 2024
    Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Post-infantile Giant Cell Hepatitis: A Literature Review and Meta-analysis.Journal of clinical and translational pathology · 2022
    Article
  18. Article
  19. Viruses associated with ill health in wild chimpanzees.American journal of primatology · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Daniel EibachDepartment of Infectious Disease Epidemiology, Bernhard Nocht Institute for Tropical Medicine, Hamburg, 20359, Germany.
Benedikt HoganDepartment of Infectious Disease Epidemiology, Bernhard Nocht Institute for Tropical Medicine, Hamburg, 20359, Germany.
Nimako SarpongKumasi Centre for Collaborative Research in Tropical Medicine, Kumasi, 40080, Ghana.
Doris WinterDepartment of Infectious Disease Epidemiology, Bernhard Nocht Institute for Tropical Medicine, Hamburg, 20359, Germany.
Nicole S StruckDepartment of Infectious Disease Epidemiology, Bernhard Nocht Institute for Tropical Medicine, Hamburg, 20359, Germany.
Yaw Adu-SarkodieDepartment of Clinical Microbiology, Kwame Nkrumah University of Science and Technology, Kumasi, 40080, Ghana.
Ellis Owusu-DaboKumasi Centre for Collaborative Research in Tropical Medicine, Kumasi, 40080, Ghana.
Jonas Schmidt-ChanasitGerman Center for Infection Research, Hamburg-Borstel-Lübeck-Riems, Borstel, 20359, Germany.
Jürgen MayDepartment of Infectious Disease Epidemiology, Bernhard Nocht Institute for Tropical Medicine, Hamburg, 20359, Germany.ORCID 0000-0001-7831-8420
Daniel CadarGerman Center for Infection Research, Hamburg-Borstel-Lübeck-Riems, Borstel, 20359, Germany. danielcadar@gmail.com.
German Center for Infection Research · DEBernhard Nocht Institute for Tropical Medicine · DEKumasi Centre for Collaborative Research in Tropical Medicine · GHKwame Nkrumah University of Science and Technology · GH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cause of acute encephalitis/meningoencephalitis in pediatric patients remains often unexplained despite extensive investigations for large panel of pathogens. To explore a possible viral implication, we investigated the virome of cerebrospinal fluid specimens of 70 febrile pediatric inpatients with clinical compatible encephalitis/meningoencephalitis. Using viral metagenomics, we detected and genetically characterized three novel human Torque teno mini virus (TTMV) species (TTMV-G1-3). Phylogenetically, TTMV-G1-3 clustered in three novel monophyletic lineages within genus Betatorquevirus of the Anelloviridae family. TTMV-G1-3 were highly prevalent in diseased children, but absent in the healthy cohort which may indicate an association of TTMV species with febrile illness. With 2/3 detected malaria co-infection, it remains unclear if these novel anellovirus species are causative agents or increase disease severity by interaction with malaria parasites. The presence of the viruses 28 days after initiating antimalarial and/or antibiotic treatment suggests a still active viral infection likely as effect of parasitic and/or bacterial co-infection that may have initiated a modulated immune system environment for viral replication or a defective virus clearance. This study increases the current knowledge on the genetic diversity of TTMV and strengthens that human anelloviruses can be considered as biomarkers for strong perturbations of the immune system in certain pathological conditions.

Indexed as

AnelloviridaeChildChild, PreschoolDNA, ViralDNA Virus InfectionsEncephalitisFemaleGhanaHumansInpatientsMaleMeningoencephalitisMetagenomicsPhylogenyPrevalenceTorque teno virusDNA, Viral

Identifiers

PMID30787417
PMCPMC6382885
OpenAlexW2917170416

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.