Evidence map›Paper›PMID 30787400›Full record

ArticleScientific reports2019

A genome-wide enhancer/suppressor screen for Dube3a interacting genes in Drosophila melanogaster.

Kevin A Hope, Addison McGinn, Lawrence T Reiter

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Review
  2. Investigating Developmental and Epileptic Encephalopathy UsingInternational journal of molecular sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Kevin A HopeDepartment of Neurology, University of Tennessee Health Science Center, Memphis, TN, USA.
Addison McGinnThe University of Oklahoma College of Medicine, Oklahoma City, OK, USA.
Lawrence T ReiterDepartment of Neurology, University of Tennessee Health Science Center, Memphis, TN, USA. lreiter@uthsc.edu.ORCID 0000-0002-4100-2630
University of Tennessee Health Science Center · USUniversity of Oklahoma · US

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
Proteomics in Drosophila to Identify Autism Candidate Substrates of UBE3AR01NS059902 · NINDS · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI REITER, LAWRENCE T · 2008 to 2011
$1.3M
NIH HHS P40 OD018537NINDS NIH HHS R01 NS059902
6 · The paper itself

Abstract

The genetics underlying autism spectrum disorder (ASD) are complex. Approximately 3-5% of ASD cases arise from maternally inherited duplications of 15q11.2-q13.1, termed Duplication 15q syndrome (Dup15q). 15q11.2-q13.1 includes the gene UBE3A which is believed to underlie ASD observed in Dup15q syndrome. UBE3A is an E3 ubiquitin ligase that targets proteins for degradation and trafficking, so finding UBE3A substrates and interacting partners is critical to understanding Dup15q ASD. In this study, we take an unbiased genetics approach to identify genes that genetically interact with Dube3a, the Drosophila melanogaster homolog of UBE3A. We conducted an enhancer/suppressor screen using a rough eye phenotype produced by Dube3a overexpression with GMR-GAL4. Using the DrosDel deficiency kit, we identified 3 out of 346 deficiency lines that enhanced rough eyes when crossed to two separate Dube3a overexpression lines, and subsequently identified IA2, GABA-B-R3, and lola as single genes responsible for rough eye enhancement. Using the FlyLight GAL4 lines to express uas-Dube3a + uas-GFP in the endogenous lola pattern, we observed an increase in the GFP signal compared to uas-GFP alone, suggesting a transcriptional co-activation effect of Dube3a on the lola promoter region. These findings extend the role of Dube3a/UBE3A as a transcriptional co-activator, and reveal new Dube3a interacting genes.

Indexed as

Drosophila ProteinsEnhancer Elements, GeneticGenes, SuppressorReceptors, GABA-BAnimalsAutism Spectrum DisorderChromosome AberrationsChromosomes, Human, Pair 15Drosophila melanogasterEpistasis, GeneticGenome-Wide Association StudyHumansIntellectual DisabilityReceptor-Like Protein Tyrosine Phosphatases, Class 8Transcriptional ActivationTranscription FactorsDrosophila ProteinsGABA-B-R3 protein, DrosophilaGAL4 protein, Drosophilalola protein, DrosophilaReceptor-Like Protein Tyrosine Phosphatases, Class 8Receptors, GABA-BTranscription FactorsUbe3a protein, DrosophilaUBE3A protein, humanUbiquitin-Protein Ligases

Identifiers

PMID30787400
PMCPMC6382765
OpenAlexW2937380960

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.