Evidence map›Paper›PMID 30787293›Full record

ArticleNature communications2019

A sequestered fusion peptide in the structure of an HIV-1 transmitted founder envelope trimer.

Neeti Ananthaswamy, Qianglin Fang, Wadad AlSalmi, Swati Jain, Zhenguo Chen, Thomas Klose, Yingyuan Sun, Yue Liu, Marthandan Mahalingam, Subhash Chand and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Neeti AnanthaswamyDepartment of Biology, The Catholic University of America, Washington, DC, 20064, USA.
Qianglin FangDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.
Wadad AlSalmiDepartment of Biology, The Catholic University of America, Washington, DC, 20064, USA.
Swati JainDepartment of Biology, The Catholic University of America, Washington, DC, 20064, USA.
Zhenguo ChenDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.
Thomas KloseDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.ORCID http://orcid.org/0000-0002-2150-9792
Yingyuan SunDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.
Yue LiuDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.ORCID http://orcid.org/0000-0002-8759-5478
Marthandan MahalingamDepartment of Biology, The Catholic University of America, Washington, DC, 20064, USA.
Subhash ChandDepartment of Biology, The Catholic University of America, Washington, DC, 20064, USA.ORCID http://orcid.org/0000-0002-2072-2743
Sodsai TovanabutraU.S. Military HIV Research Program, Henry M. Jackson Foundation for the Advancement of Military Medicine, Silver Spring, MD, 20910, USA.
Merlin L RobbU.S. Military HIV Research Program, Henry M. Jackson Foundation for the Advancement of Military Medicine, Silver Spring, MD, 20910, USA.
Michael G RossmannDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA. mr@purdue.edu.
Venigalla B RaoDepartment of Biology, The Catholic University of America, Washington, DC, 20064, USA. rao@cua.edu.ORCID http://orcid.org/0000-0002-0777-6587

Funding

STRUCTURE OF A SMALL SPHERICAL VIRUSR37AI011219 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI ROSSMANN, MICHAEL G · 1986 to 2015
$6.6M
Single Dose, Multivalent, Anthrax Plague Vaccines using Bacteriophage T4 NanopartR01AI111538 · NIAID · CATHOLIC UNIVERSITY OF AMERICA · PI RAO, VENIGALLA B. · 2014 to 2018
$3.6M
STRUCTURE OF A SMALL SPHERICAL VIRUSR01AI011219 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI KUHN, RICHARD J. · 1985 to 2020
$2.4M
Potent Phage T4 Derived V2 Immunogens as HIV VaccinesR01AI102725 · NIAID · CATHOLIC UNIVERSITY OF AMERICA · PI RAO, VENIGALLA B. · 2012 to 2015
$1.7M
NIAID NIH HHS R01 AI011219NIAID NIH HHS R01 AI102725NIAID NIH HHS R01 AI111538NIAID NIH HHS R37 AI011219
6 · The paper itself

Abstract

The envelope protein of human immunodeficiency virus-1 (HIV-1) and its fusion peptide are essential for cell entry and vaccine design. Here, we describe the 3.9-Å resolution structure of an envelope protein trimer from a very early transmitted founder virus (CRF01_AE T/F100) complexed with Fab from the broadly neutralizing antibody (bNAb) 8ANC195. The overall T/F100 trimer structure is similar to other reported "closed" state prefusion trimer structures. In contrast, the fusion peptide, which is exposed to solvent in reported closed structures, is sequestered (buried) in the hydrophobic core of the T/F100 trimer. A buried conformation has previously been observed in "open" state structures formed after CD4 receptor binding. The T/F100 trimer binds poorly to bNAbs including the fusion peptide-specific bNAbs PGT151 and VRC34.01. The T/F100 structure might represent a prefusion state, intermediate between the closed and open states. These observations are relevant to mechanisms of HIV-1 transmission and vaccine design.

Indexed as

Antibodies, NeutralizingBinding Sites, AntibodyCryoelectron Microscopyenv Gene Products, Human Immunodeficiency VirusHIV-1HIV AntibodiesHIV Envelope Protein gp120HIV Envelope Protein gp41HumansImmunoglobulin Fab FragmentsProtein Structure, SecondaryRecombinant Fusion ProteinsAntibodies, Neutralizingenv Gene Products, Human Immunodeficiency Virusgp120 protein, Human immunodeficiency virus 1gp140 envelope protein, Human immunodeficiency virus 1gp41 protein, Human immunodeficiency virus 1HIV AntibodiesHIV Envelope Protein gp120HIV Envelope Protein gp41Immunoglobulin Fab FragmentsRecombinant Fusion Proteins

Identifiers

PMID30787293
PMCPMC6382815

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.