Evidence map›Paper›PMID 30787117›Full record

ArticlemSphere2019

Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria.

Holly M Bik, Alexandra Alexiev, Sabreen K Aulakh, Lakshmi Bharadwaj, Jennifer Flanagan, John M Haggerty, Sarah M Hird, Guillaume Jospin, Jenna M Lang, Laura A Sauder and 5 more

Open access · goldAbstract read
In one paragraph

Article in mSphere, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  7. Article
  8. Review
  9. Article
  10. Reconstruction of Metagenome-Assembled Genomes from Aquaria.Microbiology resource announcements · 2021
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Holly M BikUC Davis Genome Center, University of California-Davis, Davis, California, USA.ORCID 0000-0002-4356-3837
Alexandra AlexievUC Davis Genome Center, University of California-Davis, Davis, California, USA.
Sabreen K AulakhUC Davis Genome Center, University of California-Davis, Davis, California, USA.
Lakshmi BharadwajUC Davis Genome Center, University of California-Davis, Davis, California, USA.
Jennifer FlanaganUC Davis Genome Center, University of California-Davis, Davis, California, USA.
John M HaggertyDepartment of Biology, San Diego State University, San Diego, California, USA.
Sarah M HirdUC Davis Genome Center, University of California-Davis, Davis, California, USA.ORCID 0000-0002-1998-9387
Guillaume JospinUC Davis Genome Center, University of California-Davis, Davis, California, USA.ORCID 0000-0002-8746-2632
Jenna M LangUC Davis Genome Center, University of California-Davis, Davis, California, USA.
Laura A SauderDepartment of Biology, University of Waterloo, Waterloo, Ontario, Canada.
Josh D NeufeldDepartment of Biology, University of Waterloo, Waterloo, Ontario, Canada.ORCID 0000-0002-8722-8571
Andrew ShaverUC Davis Genome Center, University of California-Davis, Davis, California, USA.
Akshay SethiUC Davis Genome Center, University of California-Davis, Davis, California, USA.
Jonathan A EisenDepartment of Evolution and Ecology, University of California-Davis, Davis, California, USA jaeisen@ucdavis.edu.
David A CoilUC Davis Genome Center, University of California-Davis, Davis, California, USA.ORCID 0000-0001-6049-8240
University of California, Davis · USUniversity of Waterloo · CASan Diego State University · USUniversity of Connecticut · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although aquaria are common features of homes and other buildings, little is known about how environmental perturbations (i.e., tank cleaning, water changes, addition of habitat features) impact the diversity and succession of aquarium microbial communities. In this study, we sought to evaluate the hypotheses that newly established aquaria show clear microbial successional patterns over time and that common marine aquarium-conditioning practices, such as the addition of ocean-derived "live rocks" (defined as any "dead coral skeleton covered with crustose coralline algae" transferred into an aquarium from open ocean habitats) impact the diversity of microbial populations as well as nitrogen cycling in aquaria. We collected water chemistry data alongside water and sediment samples from two independent and newly established saltwater aquaria over a 3-month period. Microbial communities in samples were assessed by DNA extraction, amplification of the 16S rRNA gene, and Illumina MiSeq sequencing. Our results showed clear and replicable patterns of community succession in both aquaria, with the existence of multiple stable states for aquarium microbial assemblages. Notably, our results show that changes in aquarium microbial communities do not always correlate with water chemistry measurements and that operational taxonomic unit (OTU)-level patterns relevant to nitrogen cycling were not reported as statistically significant. Overall, our results demonstrate that aquarium perturbations have a substantial impact on microbial community profiles of aquarium water and sediment and that the addition of live rocks improves nutrient cycling by shifting aquarium communities toward a more typical saltwater assemblage of microbial taxa.

Indexed as

EcosystemMicrobiotaSalinityAmmonium CompoundsArchaeaBacteriaDNA, ArchaealDNA, BacterialDNA Barcoding, TaxonomicNitratesNitritesNitrogen CyclePhylogenyRNA, Ribosomal, 16SWaterAmmonium CompoundsDNA, ArchaealDNA, BacterialNitratesNitritesRNA, Ribosomal, 16SWater16S rRNA genebacteriacommunity successionmetabarcodingsaltwater aquariumwater chemistry

Identifiers

PMID30787117
PMCPMC6382968
OpenAlexW2917566537

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.