Evidence map›Paper›PMID 30785952›Full record

ArticlePLoS pathogens2019

Kaposi's sarcoma-associated herpesvirus ORF57 protein protects viral transcripts from specific nuclear RNA decay pathways by preventing hMTR4 recruitment.

Julio C Ruiz, Olga V Hunter, Nicholas K Conrad

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

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  19. CRISPR/Cas9-Mediated Knockout andJournal of virology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Julio C RuizDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas.
Olga V HunterDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas.
Nicholas K ConradDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas.ORCID 0000-0002-8562-0895
The University of Texas Southwestern Medical Center · US

Funding

Mechanisms of KSHV posttranscriptional gene regulationR01AI123165 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI CONRAD, NICHOLAS K · 2016 to 2025
$4.5M
NIAID NIH HHS R01 AI123165
6 · The paper itself

Abstract

Nuclear RNAs are subject to a number of RNA decay pathways that serve quality control and regulatory functions. As a result, any virus that expresses its genes in the nucleus must have evolved mechanisms that avoid these pathways, but the how viruses evade nuclear RNA decay remains largely unknown. The multifunctional Kaposi's sarcoma-associated herpesvirus (KSHV) ORF57 (Mta) protein is required for the nuclear stability of viral transcripts. In the absence of ORF57, we show that viral transcripts are subject to degradation by two specific nuclear RNA decay pathways, PABPN1 and PAPα/γ-mediated RNA decay (PPD) in which decay factors are recruited through poly(A) tails, and an ARS2-mediated RNA decay pathway dependent on the 5' RNA cap. In transcription pulse chase assays, ORF57 appears to act primarily by inhibiting the ARS2-mediated RNA decay pathway. In the context of viral infection in cultured cells, inactivation of both decay pathways by RNAi is necessary for the restoration of ORF57-dependent viral genes produced from an ORF57-null bacmid. Mechanistically, we demonstrate that ORF57 protects viral transcripts by preventing the recruitment of the exosome co-factor hMTR4. In addition, our data suggest that ORF57 recruitment of ALYREF inhibits hMTR4 association with some viral RNAs, whereas other KSHV transcripts are stabilized by ORF57 in an ALYREF-independent fashion. In conclusion, our studies show that KSHV RNAs are subject to nuclear degradation by two specific host pathways, PPD and ARS2-mediated decay, and ORF57 protects viral transcripts from decay by inhibiting hMTR4 recruitment.

Indexed as

Cell LineCell NucleusGene Expression Regulation, ViralGenes, ViralGTPase-Activating ProteinsHEK293 CellsHerpesvirus 8, HumanHumansNuclear ProteinsPoly(A)-Binding Protein IProtein BindingRNA-Binding ProteinsRNA HelicasesRNA, NuclearRNA StabilityRNA, ViralASAP2 protein, humanGTPase-Activating ProteinsMTREX protein, humanNuclear ProteinsORF57 protein, human herpesvirus 8PABPN1 protein, humanPoly(A)-Binding Protein IRNA-Binding ProteinsRNA HelicasesRNA, NuclearRNA, ViralTranscription FactorsViral ProteinsViral Regulatory and Accessory Proteins

Identifiers

PMID30785952
PMCPMC6398867
OpenAlexW2916932208

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.