Evidence map›Paper›PMID 30783970›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2019

In Situ Hybridization for Detection of AAV-Mediated Gene Expression.

Jacqueline E Hunter, Brittney L Gurda, Sea Young Yoon, Michael J Castle, John H Wolfe

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Jacqueline E HunterResearch Institute of the Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Brittney L GurdaResearch Institute of the Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Sea Young YoonResearch Institute of the Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Michael J CastleDepartment of Neurosciences, University of California, San Diego, La Jolla, CA, USA.
John H WolfeResearch Institute of the Children's Hospital of Philadelphia, Philadelphia, PA, USA. jhwolfe@vet.upenn.edu.
Children's Hospital of Philadelphia · USUniversity of Pennsylvania · USUniversity of California, San Diego · US

Funding

Gene transfer &NMR studies in alpha-mannosidosis brainR01DK063973 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI WOLFE, JOHN H · 2002 to 2025
$11.0M
Training Program in Neurodevelopmental DisabilitiesT32NS007413 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI AMELIA J EISCH, ERIC D MARSH · 1998 to 2026
$8.9M
Disseminated AAV Vector Transport in the Brain Via Neuronal PathwaysR01NS038690 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI WOLFE, JOHN H · 2000 to 2015
$6.7M
Disseminated gene delivery to the CNS by human iPSC-derived neural stem cellsR01NS088667 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI WOLFE, JOHN H · 2015 to 2019
$1.8M
Choroid Plexus-Directed Gene Therapy for Alpha-MannosidosisU01HD079066 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI KALER, STEPHEN GERARD, WOLFE, JOHN H · 2015 to 2017
$1.8M
NICHD NIH HHS U01 HD079066NIDDK NIH HHS R01 DK063973NINDS NIH HHS R01 NS038690NINDS NIH HHS R01 NS088667NINDS NIH HHS T32 NS007413
6 · The paper itself

Abstract

Techniques to localize vector transgenes in cells and tissues are essential in order to fully characterize gene therapy outcomes. In situ hybridization (ISH) uses synthesized complementary RNA or DNA nucleotide probes to localize and detect sequences of interest in fixed cells, tissue sections, or whole tissue mounts. Variations in techniques include adding labels to probes, such as fluorophores, which can allow for the simultaneous visualization of multiple targets. Here we provide the steps necessary to: (1) label probes for colorimetric visualization and (2) perform ISH on OCT cryo-preserved fixed frozen tissues.

Indexed as

Gene ExpressionIn Situ HybridizationDependovirusGenetic VectorsGene Transfer TechniquesHumansImmunohistochemistryIn Situ Hybridization, FluorescenceRNA ProbesTransduction, GeneticTransgenesRNA ProbesCell-specific labelingDIG labelingFISHFluorescence in situ hybridizationHybridizationIn situ hybridizationISHRiboprobes

Identifiers

PMID30783970
PMCPMC7029785
OpenAlexW2915554220

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.