Evidence map›Paper›PMID 30783168›Full record

ArticleScientific reports2019

Crystal structure and substrate interactions of an unusual fungal non-CBM carrying GH26 endo-β-mannanase from Yunnania penicillata.

Pernille von Freiesleben, Olga V Moroz, Elena Blagova, Mathias Wiemann, Nikolaj Spodsberg, Jane W Agger, Gideon J Davies, Keith S Wilson, Henrik Stålbrand, Anne S Meyer and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Thermostability modification of β-mannanase fromFrontiers in microbiology · 2023
    Article
  6. Article
  7. A surface-exposed GH26 β-mannanase fromThe Journal of biological chemistry · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Pernille von FreieslebenNovozymes A/S, Krogshøjvej 36, 2880, Bagsværd, Denmark.
Olga V MorozYork Structural Biology Laboratory, Department of Chemistry, University of York, York, YO10 5DD, UK.
Elena BlagovaYork Structural Biology Laboratory, Department of Chemistry, University of York, York, YO10 5DD, UK.
Mathias WiemannDepartment of Biochemistry and Structural Biology, Center for Molecular Protein Science, Lund University, PO Box 124, SE-221 00, Lund, Sweden.
Nikolaj SpodsbergNovozymes A/S, Krogshøjvej 36, 2880, Bagsværd, Denmark.
Jane W AggerDTU Bioengineering, Department of Biotechnology and Biomedicine, Building 221, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark.
Gideon J DaviesYork Structural Biology Laboratory, Department of Chemistry, University of York, York, YO10 5DD, UK.ORCID 0000-0002-7343-776X
Keith S WilsonYork Structural Biology Laboratory, Department of Chemistry, University of York, York, YO10 5DD, UK. keith.wilson@york.ac.uk.
Henrik StålbrandDepartment of Biochemistry and Structural Biology, Center for Molecular Protein Science, Lund University, PO Box 124, SE-221 00, Lund, Sweden.
Anne S MeyerDTU Bioengineering, Department of Biotechnology and Biomedicine, Building 221, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark. asme@dtu.dk.ORCID 0000-0001-8910-9931
Kristian B R M KroghNovozymes A/S, Krogshøjvej 36, 2880, Bagsværd, Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Endo-β(1 → 4)-mannanases (endomannanases) catalyse degradation of β-mannans, an abundant class of plant polysaccharides. This study investigates structural features and substrate binding of YpenMan26A, a non-CBM carrying endomannanase from Yunnania penicillata. Structural and sequence comparisons to other fungal family GH26 endomannanases showed high sequence similarities and conserved binding residues, indicating that fungal GH26 endomannanases accommodate galactopyranosyl units in the -3 and -2 subsites. Two striking amino acid differences in the active site were found when the YpenMan26A structure was compared to a homology model of Wsp.Man26A from Westerdykella sp. and the sequences of nine other fungal GH26 endomannanases. Two YpenMan26A mutants, W110H and D37T, inspired by differences observed in Wsp.Man26A, produced a shift in how mannopentaose bound across the active site cleft and a decreased affinity for galactose in the -2 subsite, respectively, compared to YpenMan26A. YpenMan26A was moreover found to have a flexible surface loop in the position where PansMan26A from Podospora anserina has an α-helix (α9) which interacts with its family 35 CBM. Sequence alignment inferred that the core structure of fungal GH26 endomannanases differ depending on the natural presence of this type of CBM. These new findings have implications for selecting and optimising these enzymes for galactomannandegradation.

Indexed as

Models, MolecularAscomycotabeta-MannosidaseCatalytic DomainFungal ProteinsPolysaccharidesSubstrate Specificitybeta-MannosidaseFungal ProteinsPolysaccharides

Identifiers

PMID30783168
PMCPMC6381184

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