Evidence map›Paper›PMID 30782824›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Early lineage specification defines alveolar epithelial ontogeny in the murine lung.

David B Frank, Ian J Penkala, Jarod A Zepp, Aravind Sivakumar, Ricardo Linares-Saldana, William J Zacharias, Katharine G Stolz, Josh Pankin, MinQi Lu, Qiaohong Wang and 6 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed.

  1. Article
  2. Novel netrin-1-Unc5b-Klf4 axis balances AT2 survival in experimental bronchopulmonary dysplasia.American journal of respiratory cell and molecular biology · 2026
    Article
  3. Article
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  9. Article
  10. Article
  11. Article
  12. Review
  13. Cellular plasticity and regenerative mechanisms in the lung.European respiratory review : an official journal of the European Respiratory Society · 2026
    Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review

33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

David B FrankDivision of Pediatric Cardiology, Department of Pediatrics, Children's Hospital of Philadelphia, University of Pennsylvania, Philadelphia, PA 19104; frankd@email.chop.edu jainr@pennmedicine.upenn.edu emorrise@pennmedicine.upenn.edu.
Ian J PenkalaDepartment of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Jarod A ZeppPenn Center for Pulmonary Biology, University of Pennsylvania, Philadelphia, PA 19104.
Aravind SivakumarDivision of Pediatric Cardiology, Department of Pediatrics, Children's Hospital of Philadelphia, University of Pennsylvania, Philadelphia, PA 19104.
Ricardo Linares-SaldanaPenn Cardiovascular Institute, University of Pennsylvania, Philadelphia, PA 19104.
William J ZachariasDivision of Pulmonary Biology, Department of Pediatrics, Cincinnati Children's Hospital, University of Cincinnati College of Medicine, Cincinnati, OH 45229.
Katharine G StolzDivision of Pediatric Cardiology, Department of Pediatrics, Children's Hospital of Philadelphia, University of Pennsylvania, Philadelphia, PA 19104.
Josh PankinDivision of Pediatric Cardiology, Department of Pediatrics, Children's Hospital of Philadelphia, University of Pennsylvania, Philadelphia, PA 19104.
MinQi LuDivision of Pediatric Cardiology, Department of Pediatrics, Children's Hospital of Philadelphia, University of Pennsylvania, Philadelphia, PA 19104.
Qiaohong WangPenn Cardiovascular Institute, University of Pennsylvania, Philadelphia, PA 19104.
Apoorva BabuPenn Cardiovascular Institute, University of Pennsylvania, Philadelphia, PA 19104.
Li LiPenn Cardiovascular Institute, University of Pennsylvania, Philadelphia, PA 19104.
Su ZhouPenn Cardiovascular Institute, University of Pennsylvania, Philadelphia, PA 19104.
Michael P MorleyPenn Center for Pulmonary Biology, University of Pennsylvania, Philadelphia, PA 19104.
Rajan JainPenn Cardiovascular Institute, University of Pennsylvania, Philadelphia, PA 19104; frankd@email.chop.edu jainr@pennmedicine.upenn.edu emorrise@pennmedicine.upenn.edu.
Edward E MorriseyPenn Center for Pulmonary Biology, University of Pennsylvania, Philadelphia, PA 19104; frankd@email.chop.edu jainr@pennmedicine.upenn.edu emorrise@pennmedicine.upenn.edu.

Funding

Training in Molecular Therapeutics for Pediatric CardiologyT32HL007915 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI Robert J Levy, JOSEPH W ROSSANO · 1999 to 2026
$13.4M
Training Program in Cardiovascular Biology and MedicineT32HL007843 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI THOMAS P. CAPPOLA, Sharlene M Day · 1996 to 2026
$11.0M
TRAINING IN PULMONARY IMMUNOLOGYT32HL007586 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI MEYER, NUALA JENNINGS · 1985 to 2025
$8.8M
Editing Alveolar Progenitor Cells for Correction of Monogenic DiseaseU01HL134745 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI KOTTON, DARRELL N., MORRISEY, EDWARD E · 2016 to 2022
$8.3M
Pediatric Scholars ProgramK12HD043245 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI ST. GEME, JOSEPH W. · 2003 to 2022
$7.4M
Molecular pathways controlling alveolar epithelial remodeling in development and regenerationR01HL132999 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI MORRISEY, EDWARD E · 2016 to 2023
$4.6M
Epigenic Regulation of Lung Progenitor Repair and RegenerationU01HL110942 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI MORRISEY, EDWARD E · 2012 to 2016
$3.4M
Deciphering Nuclear Lamina-Chromatin Organization in Cellular Competence and Cardiac DevelopmentDP2HL147123 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI JAIN, RAJAN · 2018 to 2018
$2.4M
Developmental pathways regulating adult lung quiescenceR01HL132349 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI MORRISEY, EDWARD E · 2016 to 2019
$2.3M
Wnt-mediated epithelial-endothelial crosstalk in the generation and regeneration of the lung alveolusK08HL140129 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI FRANK, DAVID BRIAN · 2018 to 2022
$797k
Temporal and transcriptional control of alveolar epithelial type 1 cell fate and plasticity during developmentF31HL140785 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI PENKALA, IAN JAMES · 2018 to 2019
$90k
NHLBI NIH HHS DP2 HL147123NHLBI NIH HHS F31 HL140785NHLBI NIH HHS K08 HL140129NHLBI NIH HHS L40 HL129325NHLBI NIH HHS R01 HL132349NHLBI NIH HHS R01 HL132999NHLBI NIH HHS T32 HL007586NHLBI NIH HHS T32 HL007843NHLBI NIH HHS T32 HL007915NHLBI NIH HHS U01 HL110942NHLBI NIH HHS U01 HL134745NICHD NIH HHS K12 HD043245
6 · The paper itself

Abstract

During the stepwise specification and differentiation of tissue-specific multipotent progenitors, lineage-specific transcriptional networks are activated or repressed to orchestrate cell specification. The gas-exchange niche in the lung contains two major epithelial cell types, alveolar type 1 (AT1) and AT2 cells, and the timing of lineage specification of these cells is critical for the correct formation of this niche and postnatal survival. Integrating cell-specific lineage tracing studies, spatially specific mRNA transcript and protein expression, and single-cell RNA-sequencing analysis, we demonstrate that specification of alveolar epithelial cell fate begins concomitantly with the proximal-distal specification of epithelial progenitors and branching morphogenesis earlier than previously appreciated. By using a newly developed dual-lineage tracing system, we show that bipotent alveolar cells that give rise to AT1 and AT2 cells are a minor contributor to the alveolar epithelial population. Furthermore, single-cell assessment of the transcriptome identifies specified AT1 and AT2 progenitors rather than bipotent cells during sacculation. These data reveal a paradigm of organ formation whereby lineage specification occurs during the nascent stages of development coincident with broad tissue-patterning processes, including axial patterning of the endoderm and branching morphogenesis.

Indexed as

Cell LineageAnimalsCell DifferentiationFemaleIn Situ Hybridization, FluorescenceLungMicePregnancyPulmonary AlveoliTranscriptomealveolar epitheliumlineage fatelung developmentsingle-cell RNA sequencing

Identifiers

PMID30782824
PMCPMC6410851

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.