ArticleG3 (Bethesda, Md.)2019
Genomic Prediction of Autotetraploids; Influence of Relationship Matrices, Allele Dosage, and Continuous Genotyping Calls in Phenotype Prediction.
Article in G3 (Bethesda, Md.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.
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Who cites it
57 citing papers in PubMed.
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- Long-read low-pass sequencing enhances variant detection in a peanut MAGIC population.G3 (Bethesda, Md.) · 2026Article
- Genetic insights into bacterial wilt resistance using genomic prediction and association mapping in blueberry.The plant genome · 2026Article
- Accelerating genetic gain through integrated genomic selection in crop plants.Journal of applied genetics · 2026Review
- Next-Generation Genotyping: Innovations Driving Plant Genomic Improvement.Life (Basel, Switzerland) · 2026Review
- Integrating genomic prediction into crop DUS testing: new approaches in support of reference collection management and distinctness assessment.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- High-density linkage map and QTL analyses for fruit quality traits in the wild blueberry relative Vaccinium stamineum.G3 (Bethesda, Md.) · 2026Article
- Genomic resources for Australian alfalfa (Medicago sativa L.) genomics: reformatted reference genome, annotated variants, gene presence-absence and diversity analysis from genome re-sequencing.BMC plant biology · 2025Article
- Imputef: imputation of polyploid genotype classes and allele frequencies.BMC genomics · 2025Article
- Leveraging genetic resources and genomic prediction to enhance flavonol content in cranberry fruit.The plant genome · 2025Article
- Genetic analysis of predicted vegetative biomass and biomass-related traits from digital phenotyping of strawberry.The plant genome · 2025Article
- Quantitative genetic analysis of late spring mortality in triploid Crassostrea virginica.Genetics, selection, evolution : GSE · 2025Article
- Genomic selection in a kiwiberry breeding programme: integrating intra- and inter-specific crossing.Molecular breeding : new strategies in plant improvement · 2025Article
- Exploiting historical agronomic data to develop genomic prediction strategies for early clonal selection in the Louisiana sugarcane variety development program.The plant genome · 2025Article
- Optimization of high-throughput marker systems for genomic prediction in alfalfa family bulks.The plant genome · 2025Article
- A consumer-oriented approach to define breeding targets for molecular breeding.The New phytologist · 2025Article
- Inference of the genetic basis of fruit texture in highbush blueberries using genome-wide association analyses.Horticulture research · 2024Article
- Understanding the genetic basis of blueberry postharvest traits to define better breeding strategies.G3 (Bethesda, Md.) · 2024Article
- Genomic selection optimization in blueberry: Data-driven methods for marker and training population design.The plant genome · 2024Article
- Machine learning for genomic and pedigree prediction in sugarcane.The plant genome · 2024Article
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Estimation of allele dosage, using genomic data, in autopolyploids is challenging and current methods often result in the misclassification of genotypes. Some progress has been made when using SNP arrays, but the major challenge is when using next generation sequencing data. Here we compare the use of read depth as continuous parameterization with ploidy parameterizations in the context of genomic selection (GS). Additionally, different sources of information to build relationship matrices were compared. A real breeding population of the autotetraploid species blueberry (
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