Evidence map›Paper›PMID 30781701›Full record

ArticleInternational journal of molecular sciences2019

LJELSR: A Strengthened Version of JELSR for Feature Selection and Clustering.

Sha-Sha Wu, Mi-Xiao Hou, Chun-Mei Feng, Jin-Xing Liu

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sha-Sha WuSchool of Information Science and Engineering, Qufu Normal University, Rizhao 276826, China. wushashaqf@gmail.com.
Mi-Xiao HouSchool of Information Science and Engineering, Qufu Normal University, Rizhao 276826, China. mixiaohousz@gmail.com.
Chun-Mei FengSchool of Information Science and Engineering, Qufu Normal University, Rizhao 276826, China. strawberry.feng0304@gmail.com.
Jin-Xing LiuSchool of Information Science and Engineering, Qufu Normal University, Rizhao 276826, China. sdcavell@qfnu.edu.cn.

Funding

the National Natural Science Foundation of China 61872220 and 61572284.
6 · The paper itself

Abstract

Feature selection and sample clustering play an important role in bioinformatics. Traditional feature selection methods separate sparse regression and embedding learning. Later, to effectively identify the significant features of the genomic data, Joint Embedding Learning and Sparse Regression (JELSR) is proposed. However, since there are many redundancy and noise values in genomic data, the sparseness of this method is far from enough. In this paper, we propose a strengthened version of JELSR by adding the L₁-norm constraint on the regularization term based on a previous model, and call it LJELSR, to further improve the sparseness of the method. Then, we provide a new iterative algorithm to obtain the convergence solution. The experimental results show that our method achieves a state-of-the-art level both in identifying differentially expressed genes and sample clustering on different genomic data compared to previous methods. Additionally, the selected differentially expressed genes may be of great value in medical research.

Indexed as

AlgorithmsCluster AnalysisColonic NeoplasmsDatabases as TopicEsophageal NeoplasmsGene Expression ProfilingHumansRegression Analysisdifferentially expressed genesfeature selectionL1-normsample clusteringsparse constraint

Identifiers

PMID30781701
PMCPMC6412528

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.