Evidence map›Paper›PMID 30778576›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2019

An ancillary genomics system to support the return of pharmacogenomic results.

Luke V Rasmussen, Maureen E Smith, Federico Almaraz, Stephen D Persell, Laura J Rasmussen-Torvik, Jennifer A Pacheco, Rex L Chisholm, Carl Christensen, Timothy M Herr, Firas H Wehbe and 1 more

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Advancing Pharmacogenomics from Single-Gene to Preemptive Testing.Annual review of genomics and human genetics · 2022
    Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Managing Increased Accessibility to Pharmacogenomic Data.Clinical pharmacology and therapeutics · 2019
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Luke V RasmussenDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL.
Maureen E SmithCenter for Genetic Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL.
Federico AlmarazDepartment of Information Technology, Northwestern Memorial HealthCare, Chicago, IL.
Stephen D PersellDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL.
Laura J Rasmussen-TorvikDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL.
Jennifer A PachecoCenter for Genetic Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL.
Rex L ChisholmCenter for Genetic Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL.
Carl ChristensenDepartment of Information Technology, Northwestern Memorial HealthCare, Chicago, IL.
Timothy M HerrDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL.
Firas H WehbeDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL.
Justin B StarrenDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL.

Funding

A Personalized Genomic Medicine Pilot Program Using the NJgene eMERGE ExperienceU01HG006388 · NHGRI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHISHOLM, REX L, SMITH, MAUREEN E · 2011 to 2014
$4.1M
Improving Physician Adoption of Pharmacogenomic Clinical Decision Support via Implementation Science MethodologiesF31LM012492 · NLM · NORTHWESTERN UNIVERSITY AT CHICAGO · PI HERR, TIM · 2017 to 2018
$77k
NHGRI NIH HHS U01 HG006388NLM NIH HHS F31 LM012492
6 · The paper itself

Abstract

Existing approaches to managing genetic and genomic test results from external laboratories typically include filing of text reports within the electronic health record, making them unavailable in many cases for clinical decision support. Even when structured computable results are available, the lack of adopted standards requires considerations for processing the results into actionable knowledge, in addition to storage and management of the data. Here, we describe the design and implementation of an ancillary genomics system used to receive and process heterogeneous results from external laboratories, which returns a descriptive phenotype to the electronic health record in support of pharmacogenetic clinical decision support.

Indexed as

Databases, GeneticGenomicsPharmacogeneticsDecision Support Systems, ClinicalElectronic Health RecordsGenetic TestingGenotypeHumansPhenotypeelectronic health recordgenetic testingpharmacogenomics

Identifiers

PMID30778576
PMCPMC6402311

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.