Evidence map›Paper›PMID 30778235›Full record

ArticleNature structural & molecular biology2019

Apn2 resolves blocked 3' ends and suppresses Top1-induced mutagenesis at genomic rNMP sites.

Fuyang Li, Quan Wang, Ja-Hwan Seol, Jun Che, Xiaoyu Lu, Eun Yong Shim, Sang Eun Lee, Hengyao Niu

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. How RNA impacts DNA repair.DNA repair · 2023
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Ribonucleotide incorporation into DNA during DNA replication and its consequences.Critical reviews in biochemistry and molecular biology · 2021
    Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Fuyang LiDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.
Quan WangDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA.
Ja-Hwan SeolDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.
Jun CheDepartment of Radiation Oncology, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.
Xiaoyu LuDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA.
Eun Yong ShimDepartment of Radiation Oncology, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.
Sang Eun LeeDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA. lees4@uthscsa.edu.ORCID http://orcid.org/0000-0002-0799-4701
Hengyao NiuDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA. hniu@indiana.edu.ORCID http://orcid.org/0000-0003-1768-0674
The University of Texas Health Science Center at San Antonio · USIndiana University Bloomington · US

Funding

Mechanisms of Error Prone Repair of DNA BreaksR01GM071011 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LEE, SANG EUN · 2004 to 2021
$4.5M
Mechanisms of DNA helicases and nucleases in genome maintenanceR35GM124765 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI NIU, HENGYAO · 2017 to 2021
$2.0M
NIGMS NIH HHS R01 GM071011NIGMS NIH HHS R35 GM124765
6 · The paper itself

Abstract

Ribonucleoside monophosphates (rNMPs) mis-incorporated during DNA replication are removed by RNase H2-dependent excision repair or by topoisomerase I (Top1)-catalyzed cleavage. The cleavage of rNMPs by Top1 produces 3' ends harboring terminal adducts, such as 2',3'-cyclic phosphate or Top1 cleavage complex (Top1cc), and leads to frequent mutagenesis and DNA damage checkpoint induction. We surveyed a range of candidate enzymes from Saccharomyces cerevisiae for potential roles in Top1-dependent genomic rNMP removal. Genetic and biochemical analyses reveal that Apn2 resolves phosphotyrosine-DNA conjugates, terminal 2',3'-cyclic phosphates, and their hydrolyzed products. APN2 also suppresses 2-base pair (bp) slippage mutagenesis in RNH201-deficient cells. Our results define additional activities of Apn2 in resolving a wide range of 3' end blocks and identify a role for Apn2 in maintaining genome integrity during rNMP repair.

Indexed as

3' Untranslated RegionsBase PairingDNA-(Apurinic or Apyrimidinic Site) LyaseDNA, FungalDNA RepairDNA ReplicationDNA Topoisomerases, Type IGenome, FungalMutagenesisRibonucleasesRibonucleotidesSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteins3' Untranslated RegionsAPN2 protein, S cerevisiaeDNA-(Apurinic or Apyrimidinic Site) LyaseDNA, FungalDNA Topoisomerases, Type IRibonucleasesRibonucleotidesRnh201 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTOP1 protein, S cerevisiae

Identifiers

PMID30778235
PMCPMC6515903
OpenAlexW2914878771

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.