Evidence map›Paper›PMID 30778122›Full record

ArticleScientific reports2019

Metabolic adaptation of adherent-invasive Escherichia coli to exposure to bile salts.

Julien Delmas, Lucie Gibold, Tiphanie Faïs, Sylvine Batista, Martin Leremboure, Clara Sinel, Emilie Vazeille, Vincent Cattoir, Anthony Buisson, Nicolas Barnich and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 58 citations in OpenAlex.

  1. Review
  2. Journal of bacteriology · 2026
    Review
  3. Review
  4. Infection strategies ofGut microbes reports · 2026
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Identification of differences in gene expression implicated in the Adherent-InvasiveFrontiers in cellular and infection microbiology · 2023
    Article
  17. Role of adherent invasiveWorld journal of clinical cases · 2022
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Julien DelmasDepartment of Bacteriology, University Hospital of Clermont-Ferrand, Clermont-Ferrand, France. julien.delmas@uca.fr.ORCID 0000-0002-9579-0660
Lucie GiboldDepartment of Bacteriology, University Hospital of Clermont-Ferrand, Clermont-Ferrand, France.
Tiphanie FaïsDepartment of Bacteriology, University Hospital of Clermont-Ferrand, Clermont-Ferrand, France.
Sylvine BatistaDepartment of Bacteriology, University Hospital of Clermont-Ferrand, Clermont-Ferrand, France.
Martin LeremboureUniversity Clermont Auvergne, institut de Chimie, CNRS UMR 6296, Clermont-Ferrand, France.
Clara SinelUniversity Caen Normandie, équipe antibiorésistance EA, 4655, Caen, France.
Emilie VazeilleUniversity Clermont Auvergne, Inserm U1071, INRA USC2018, M2iSH, F-63000, Clermont-Ferrand, France.
Vincent CattoirUniversity Caen Normandie, équipe antibiorésistance EA, 4655, Caen, France.
Anthony BuissonUniversity Clermont Auvergne, Inserm U1071, INRA USC2018, M2iSH, F-63000, Clermont-Ferrand, France.
Nicolas BarnichUniversity Clermont Auvergne, Inserm U1071, INRA USC2018, M2iSH, F-63000, Clermont-Ferrand, France.
Guillaume DalmassoUniversity Clermont Auvergne, Inserm U1071, INRA USC2018, M2iSH, F-63000, Clermont-Ferrand, France.ORCID 0000-0002-3433-870X
Richard BonnetDepartment of Bacteriology, University Hospital of Clermont-Ferrand, Clermont-Ferrand, France.
Inserm · FRUniversité de Caen Normandie · FRCentre Hospitalier Universitaire de Clermont-Ferrand · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The adherent-invasive Escherichia coli (AIEC), which colonize the ileal mucosa of Crohn's disease patients, adhere to intestinal epithelial cells, invade them and exacerbate intestinal inflammation. The high nutrient competition between the commensal microbiota and AIEC pathobiont requires the latter to occupy their own metabolic niches to survive and proliferate within the gut. In this study, a global RNA sequencing of AIEC strain LF82 has been used to observe the impact of bile salts on the expression of metabolic genes. The results showed a global up-regulation of genes involved in degradation and a down-regulation of those implicated in biosynthesis. The main up-regulated degradation pathways were ethanolamine, 1,2-propanediol and citrate utilization, as well as the methyl-citrate pathway. Our study reveals that ethanolamine utilization bestows a competitive advantage of AIEC strains that are metabolically capable of its degradation in the presence of bile salts. We observed that bile salts activated secondary metabolism pathways that communicate to provide an energy benefit to AIEC. Bile salts may be used by AIEC as an environmental signal to promote their colonization.

Indexed as

Acetyl Coenzyme AAdaptation, PhysiologicalAnimalsBacterial AdhesionBile Acids and SaltsCrohn DiseaseEscherichia coliEscherichia coli InfectionsEthanolamineGastrointestinal MicrobiomeGenes, BacterialHost Microbial InteractionsHumansIleumIntestinal MucosaMetabolic Networks and PathwaysAcetyl Coenzyme ABile Acids and SaltsEthanolaminePropylene Glycol

Identifiers

PMID30778122
PMCPMC6379400
OpenAlexW2911334366

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.