Evidence map›Paper›PMID 30778110›Full record

ArticleScientific reports2019

First Detection of DS-1-like G1P[8] Double-gene Reassortant Rotavirus Strains on The American Continent, Brazil, 2013.

Adriana Luchs, Antonio Charlys da Costa, Audrey Cilli, Shirley Cavalcante Vasconcelos Komninakis, Rita de Cássia Compagnoli Carmona, Simone Guadagnucci Morillo, Ester Cerdeira Sabino, Maria do Carmo Sampaio Tavares Timenetsky

Abstract readHistorical Article
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  7. Phylodynamic characteristics of reassortant DS-1-like G3P[8]-strains of rotavirus type A isolated in Nizhny Novgorod (Russia).Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Adriana LuchsEnteric Disease Laboratory, Virology Center, Adolfo Lutz Institute, São Paulo, Brazil. driluchs@gmail.com.ORCID 0000-0003-4131-990X
Antonio Charlys da CostaLIM/46 - Laboratory of Medical Parasitology, Department of Infectious and Parasitic Diseases, College of Medicine, University of São Paulo, São Paulo, Brazil.ORCID 0000-0001-5516-5177
Audrey CilliEnteric Disease Laboratory, Virology Center, Adolfo Lutz Institute, São Paulo, Brazil.
Shirley Cavalcante Vasconcelos KomninakisPostgraduate Program in Health Science, Faculty of Medicine of ABC, Santo André, Brazil.
Rita de Cássia Compagnoli CarmonaEnteric Disease Laboratory, Virology Center, Adolfo Lutz Institute, São Paulo, Brazil.
Simone Guadagnucci MorilloEnteric Disease Laboratory, Virology Center, Adolfo Lutz Institute, São Paulo, Brazil.
Ester Cerdeira SabinoLIM/46 - Laboratory of Medical Parasitology, Department of Infectious and Parasitic Diseases, College of Medicine, University of São Paulo, São Paulo, Brazil.
Maria do Carmo Sampaio Tavares TimenetskyEnteric Disease Laboratory, Virology Center, Adolfo Lutz Institute, São Paulo, Brazil. timenetsky.m@gmail.com.

Funding

Ministry of Science, Technology and Innovation | Conselho Nacional de Desenvolvimento Científico e Tecnológico (National Council for Scientific and Technological Development) 400354/2016-0
6 · The paper itself

Abstract

Emergence of DS-1-like-G1P[8] rotavirus in Asia have been recently reported. We report for the first time the detection and the whole genome phylogenetic analysis of DS-1-like-G1P[8] strains in America. From 2013 to 2017, a total of 4226 fecal samples were screened for rotavirus by ELISA, PAGE, RT-PCR and sequencing. G1P[8] represented 3.7% (30/800) of all rotavirus-positive samples. DS-1-like-G1P[8] comprised 1.6% (13/800) detected exclusively in 2013, and Wa-like-G1P[8] comprised 2.1% (17/800) detected from 2013 to 2015. Whole genome sequencing confirmed the DS-1-like backbone I2-R2-C2-M2-A2-N2-T2-E2-H2. All genome segments of the Brazilian DS-1-like-G1P[8] strains clustered with those of Asian strains, and apart from African DS-1-like-G1P[8] strains. In addition, Brazilian DS-1-like-G1P[8] reassortants distantly clustered with DS-1-like backbone strains simultaneously circulating in the country, suggesting that the Brazilian DS-1-like-G1P[8] strains are likely imported from Asia. Two distinct NSP4 E2 genotype lineages were also identified, indicating the existence of a co-circulating pool of different DS-1-like G1P[8] strains. Surveillance systems must be developed to examine if RVA vaccines are still effective for the prevention against unusual DS-1-like-G1P[8] strains.

Indexed as

Genes, ViralBrazilGenome, ViralGenomicsHistory, 21st CenturyHumansPhylogenyPublic Health SurveillanceReassortant VirusesRNA, ViralRotavirusRotavirus InfectionsRNA, Viral

Identifiers

PMID30778110
PMCPMC6379365

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.