Evidence map›Paper›PMID 30777925›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2019

Next Generation Sequencing of the Pig αβ TCR Repertoire Identifies the Porcine Invariant NKT Cell Receptor.

Guan Yang, Bianca L Artiaga, Carrie L Lomelino, Anitha D Jayaprakash, Ravi Sachidanandam, Robert Mckenna, John P Driver

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

  1. Integrated Single-Cell and TCR Profiling Reveals Protection-Associated CD8Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  10. Frontiers in immunology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Guan YangDepartment of Animal Sciences, University of Florida, Gainesville, FL 32611.ORCID 0000-0003-2316-553X
Bianca L ArtiagaDepartment of Animal Sciences, University of Florida, Gainesville, FL 32611.
Carrie L LomelinoDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Florida, Gainesville, FL 32610.
Anitha D JayaprakashGirihlet Inc., Oakland, CA 94609; and.ORCID 0000-0002-9466-243X
Ravi SachidanandamGirihlet Inc., Oakland, CA 94609; and.ORCID 0000-0001-9844-4459
Robert MckennaDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Florida, Gainesville, FL 32610.
John P DriverDepartment of Animal Sciences, University of Florida, Gainesville, FL 32611; jdriver@ufl.edu.ORCID 0000-0002-6714-3335
University of Florida · USOakland University · US

Funding

Using social networks to map and evaluate team science across CTSA hubsUL1TR001427 · NCATS · UNIVERSITY OF FLORIDA · PI MITCHELL, DUANE A. · 2015 to 2024
$37.2M
Together: Transforming and Translating Discovery to Improve HealthTL1TR001428 · NCATS · UNIVERSITY OF FLORIDA · PI MCCORMACK, WAYNE T. · 2015 to 2023
$3.9M
Harnessing Natural Killer T cells to counteract swine influenzaR01HD092286 · NICHD · UNIVERSITY OF MISSOURI-COLUMBIA · PI DRIVER, JOHN · 2017 to 2021
$2.6M
NCATS NIH HHS TL1 TR001428NCATS NIH HHS UL1 TR001427NIAID NIH HHS HHSN272201300006CNICHD NIH HHS R01 HD092286
6 · The paper itself

Abstract

Swine represent the only livestock with an established invariant NKT (iNKT) cell-CD1d system. In this study, we exploited the fact that pig iNKT cells can be purified using a mouse CD1d tetramer reagent to establish their TCR repertoire by next generation sequencing. CD1d tetramer-positive pig cells predominantly expressed an invariant Vα-Jα rearrangement, without nontemplate nucleotide diversity, homologous to the Vα24-Jα18 and Vα14-Jα18 rearrangements of human and murine iNKT cells. The coexpressed β-chain used a Vβ segment homologous to the semivariant Vβ11 and Vβ8.2 segments of human and murine iNKT cell receptors. Molecular modeling found that contacts within CD1d and CDR1α that underlie fine specificity differences between mouse and human iNKT cells are conserved between pigs and humans, indicating that the response of porcine and human iNKT cells to CD1d-restricted Ags may be similar. Accordingly, pigs, which are an important species for diverse fields of biomedical research, may be useful for developing human-based iNKT cell therapies for cancer, infectious diseases, and other disorders. Our study also sequenced the expressed TCR repertoire of conventional porcine αβ T cells, which identified 48 Vα, 50 Jα, 18 Vβ, and 18 Jβ sequences, most of which correspond to human gene segments. These findings provide information on the αβ TCR usage of pigs, which is understudied and deserves further attention.

Indexed as

AnimalsFemaleHigh-Throughput Nucleotide SequencingMaleNatural Killer T-CellsReceptors, Antigen, T-Cell, alpha-betaSwineReceptors, Antigen, T-Cell, alpha-beta

Identifiers

PMID30777925
PMCPMC6606045
OpenAlexW2916679057

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.