Evidence map›Paper›PMID 30776024›Full record

ArticleThe Journal of clinical investigation2019

Podocyte histone deacetylase activity regulates murine and human glomerular diseases.

Kazunori Inoue, Geliang Gan, Maria Ciarleglio, Yan Zhang, Xuefei Tian, Christopher E Pedigo, Corey Cavanaugh, Janet Tate, Ying Wang, Elizabeth Cross and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Article
  3. Histone deacetylases and their inhibitors in kidney diseases.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. LRG1 loss effectively restrains glomerular TGF-β signaling to attenuate diabetic kidney disease.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  10. Epigenetic mechanisms differentially regulate blood pressure and renal dysfunction in male and female Npr1 haplotype mice.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. [Inhibition of Histone Deacetylase 6 Ameliorates Podocyte Injury in Diabetic Kidney Disease in Mice].Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2023
    Article
  16. Sex-specific epigenetic programming in renal fibrosis and inflammation.American journal of physiology. Renal physiology · 2023
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 3 countries.

Kazunori InoueDepartment of Internal Medicine, and.
Geliang GanYale School of Public Health, Department of Biostatistics, Yale Center for Analytical Sciences, Yale University School of Medicine, New Haven, Connecticut, USA.
Maria CiarleglioYale School of Public Health, Department of Biostatistics, Yale Center for Analytical Sciences, Yale University School of Medicine, New Haven, Connecticut, USA.
Yan ZhangState Key Laboratory of Organ Failure Research, Nanfang Hospital.
Xuefei TianDepartment of Internal Medicine, and.
Christopher E PedigoDepartment of Internal Medicine, and.
Corey CavanaughDepartment of Internal Medicine, and.
Janet TateVA Connecticut Healthcare System, West Haven, Connecticut, USA.
Ying WangDepartment of Internal Medicine, and.
Elizabeth CrossDepartment of Internal Medicine, and.
Marwin GroenerDepartment of Internal Medicine, and.
Nathan ChaiDepartment of Internal Medicine, and.
Zhen WangDepartment of Internal Medicine, and.
Amy JusticeDepartment of Internal Medicine, and.
Zhenhai ZhangState Key Laboratory of Organ Failure Research, Nanfang Hospital.
Chirag R ParikhDepartment of Internal Medicine, Division of Nephrology, Johns Hopkins University, Baltimore, Maryland, USA.
Francis P WilsonDepartment of Internal Medicine, and.
Shuta IshibeDepartment of Internal Medicine, and.
Yale University · USState Hospital · GBVA Connecticut Healthcare System · USJohns Hopkins University · US

Funding

Renal Physiology and Phenotyping CoreP30DK079310 · NIDDK · YALE UNIVERSITY · PI ARONSON, PETER S. · 2008 to 2022
$16.8M
PATHOPHYSIOLOGY OF ACUTE AND CHRONIC RENAL DISEASET32DK007276 · NIDDK · YALE UNIVERSITY · PI ARONSON, PETER S., CANTLEY, LLOYD G · 1986 to 2022
$9.3M
Role of Focal Adhesion Kinase (FAK) in Nephrosis and NephritisR01DK083294 · NIDDK · YALE UNIVERSITY · PI ISHIBE, SHUTA · 2010 to 2025
$5.4M
The Role of Endocytosis and Actin Regulation in PodocytesR01DK093629 · NIDDK · YALE UNIVERSITY · PI Shuta Ishibe · 2012 to 2026
$5.1M
NIDDK NIH HHS P30 DK079310NIDDK NIH HHS R01 DK083294NIDDK NIH HHS R01 DK093629NIDDK NIH HHS T32 DK007276
6 · The paper itself

Abstract

We identified 2 genes, histone deacetylase 1 (HDAC1) and HDAC2, contributing to the pathogenesis of proteinuric kidney diseases, the leading cause of end-stage kidney disease. mRNA expression profiling from proteinuric mouse glomeruli was linked to Connectivity Map databases, identifying HDAC1 and HDAC2 with the differentially expressed gene set reversible by HDAC inhibitors. In numerous progressive glomerular disease models, treatment with valproic acid (a class I HDAC inhibitor) or SAHA (a pan-HDAC inhibitor) mitigated the degree of proteinuria and glomerulosclerosis, leading to a striking increase in survival. Podocyte HDAC1 and HDAC2 activities were increased in mice podocytopathy models, and podocyte-associated Hdac1 and Hdac2 genetic ablation improved proteinuria and glomerulosclerosis. Podocyte early growth response 1 (EGR1) was increased in proteinuric patients and mice in an HDAC1- and HDAC2-dependent manner. Loss of EGR1 in mice reduced proteinuria and glomerulosclerosis. Longitudinal analysis of the multicenter Veterans Aging Cohort Study demonstrated a 30% reduction in mean annual loss of estimated glomerular filtration rate, and this effect was more pronounced in proteinuric patients receiving valproic acid. These results strongly suggest that inhibition of HDAC1 and HDAC2 activities may suppress the progression of human proteinuric kidney diseases through the regulation of EGR1.

Indexed as

Glomerulosclerosis, Focal SegmentalHistone Deacetylase 1Histone Deacetylase 2PodocytesAnimalsCell Line, TumorEarly Growth Response Protein 1FemaleHistone Deacetylase InhibitorsHumansMaleMice, KnockoutProteinuriaEarly Growth Response Protein 1EGR1 protein, humanEgr1 protein, mouseHDAC1 protein, humanHdac1 protein, mouseHDAC2 protein, humanHdac2 protein, mouseHistone Deacetylase 1Histone Deacetylase 2Histone Deacetylase InhibitorsCell BiologyMolecular biologyNephrology

Identifiers

PMID30776024
PMCPMC6391095
OpenAlexW2911369437

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.