Evidence map›Paper›PMID 30775964›Full record

ArticleMicrobial genomics2019

LiSEQ - whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe.

Anaïs Painset, Jonas T Björkman, Kristoffer Kiil, Laurent Guillier, Jean-François Mariet, Benjamin Félix, Corinne Amar, Ovidiu Rotariu, Sophie Roussel, Francisco Perez-Reche and 8 more

Abstract read
In one paragraph

Article in Microbial genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed.

  1. Applied and environmental microbiology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Microorganisms · 2025
    Review
  7. Genomic Landscape and Antimicrobial Resistance ofFoods (Basel, Switzerland) · 2025
    Article
  8. Characterization of aMicrobial genomics · 2025
    Article
  9. Article
  10. Article
  11. Large-scale phenotypic and genomic analysis ofApplied and environmental microbiology · 2025
    Article
  12. Article
  13. Review
  14. Molecular Characterization ofFoods (Basel, Switzerland) · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Raw milk cheeses from Beira Baixa, Portugal-A contributive study for the microbiological hygiene and safety assessment.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  20. Journal of medical microbiology · 2024
    Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Anaïs Painset1​Public Health England Gastrointestinal Bacteria Reference Unit, 61 Colindale Avenue, London, NW9 5EQ, UK.
Jonas T Björkman3​Statens Serum Institut, 5 Artillerivej, DK-2300, Copenhagen S, Denmark.
Kristoffer Kiil3​Statens Serum Institut, 5 Artillerivej, DK-2300, Copenhagen S, Denmark.
Laurent Guillier4​Maisons-Alfort Laboratory for Food Safety, Salmonella and Listeria Unit, University of Paris-Est, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Maisons-Alfort, France.
Jean-François Mariet4​Maisons-Alfort Laboratory for Food Safety, Salmonella and Listeria Unit, University of Paris-Est, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Maisons-Alfort, France.
Benjamin Félix4​Maisons-Alfort Laboratory for Food Safety, Salmonella and Listeria Unit, University of Paris-Est, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Maisons-Alfort, France.
Corinne Amar1​Public Health England Gastrointestinal Bacteria Reference Unit, 61 Colindale Avenue, London, NW9 5EQ, UK.
Ovidiu Rotariu5​School of Biological Sciences, The University of Aberdeen, Cruickshank Building. St Machar Drive, Aberdeen, Scotland, AB24 3UU, UK.
Sophie Roussel4​Maisons-Alfort Laboratory for Food Safety, Salmonella and Listeria Unit, University of Paris-Est, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Maisons-Alfort, France.
Francisco Perez-Reche6​Institute of Complex Systems and Mathematical Biology, SUPA, School of Natural and Computing Sciences, University of Aberdeen, Aberdeen, Scotland, UK.
Sylvain Brisse7​Institut Pasteur, Paris, France.
Alexandra Moura7​Institut Pasteur, Paris, France.
Marc Lecuit7​Institut Pasteur, Paris, France.
Ken Forbes8​School of Medicine and Dentistry, The University of Aberdeen, Foresterhill, Aberdeen, Scotland, AB25 2ZD, UK.
Norval Strachan5​School of Biological Sciences, The University of Aberdeen, Cruickshank Building. St Machar Drive, Aberdeen, Scotland, AB24 3UU, UK.
Kathie Grant1​Public Health England Gastrointestinal Bacteria Reference Unit, 61 Colindale Avenue, London, NW9 5EQ, UK.
Eva Møller-Nielsen3​Statens Serum Institut, 5 Artillerivej, DK-2300, Copenhagen S, Denmark.
Timothy J Dallman2​National Institute for Health Research Health Protection Research Unit (NIHR HPRU) in Gastrointestinal Infections at University of Liverpool, Liverpool, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present the LiSEQ (Listeria SEQuencing) project, funded by the European Food Safety Agency (EFSA) to compare Listeria monocytogenes isolates collected in the European Union from ready-to-eat foods, compartments along the food chain (e.g. food-producing animals, food-processing environments) and humans. In this article, we report the molecular characterization of a selection of this data set employing whole-genome sequencing analysis. We present an overview of the strain diversity observed in different sampled sources, and characterize the isolates based on their virulence and resistance profile. We integrate into our analysis the global L. monocytogenes genome collection described by Moura and colleagues in 2016 to assess the representativeness of the LiSEQ collection in the context of known L. monocytogenes strain diversity.

Indexed as

AnimalsCross-Sectional StudiesDairy ProductsDrug Resistance, BacterialEuropeFish ProductsFood HandlingFood MicrobiologyGenetic VariationHumansListeria monocytogenesListeriosisMeat ProductsVirulenceWhole Genome Sequencingfoodgenetic diversityhumanListeria monocytogenesphylogenywhole-genome sequencing

Identifiers

PMID30775964
PMCPMC6421348

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.