Evidence map›Paper›PMID 30775776›Full record

ArticleJournal of experimental botany2019

Deficiency of AtGFAT1 activity impairs growth, pollen germination and tolerance to tunicamycin in Arabidopsis.

Kien Van Vu, Chan Young Jeong, Thuy Thi Nguyen, Trang Thi Huyen Dinh, Hojoung Lee, Suk-Whan Hong

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Oxygen sensing and plant adaptation to flooding in a changing climate.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  2. Article
  3. Review
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  5. Frontiers in plant science · 2023
    Article
  6. Interference of ArabidopsisFrontiers in plant science · 2022
    Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Kien Van VuDepartment of Molecular Biotechnology, College of Agriculture and Life Sciences, Bioenergy Research institute, Chonnam National University, Gwangju, Republic of Korea.
Chan Young JeongDepartment of Molecular Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul, Republic of Korea.
Thuy Thi NguyenDepartment of Molecular Biotechnology, College of Agriculture and Life Sciences, Bioenergy Research institute, Chonnam National University, Gwangju, Republic of Korea.
Trang Thi Huyen DinhDepartment of Molecular Biotechnology, College of Agriculture and Life Sciences, Bioenergy Research institute, Chonnam National University, Gwangju, Republic of Korea.
Hojoung LeeDepartment of Molecular Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul, Republic of Korea.
Suk-Whan HongDepartment of Molecular Biotechnology, College of Agriculture and Life Sciences, Bioenergy Research institute, Chonnam National University, Gwangju, Republic of Korea.
Chonnam National University · KRKorea University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The hexosamine biosynthetic pathway (HBP) plays essential roles in growth and development in plants. However, insight into the biological function of glutamine:fructose-6-phosphate amidotransferase 1 (GFAT1), mediating the first regulatory step of the HBP, remains unclear in plants. Here, we report the molecular characterization of Arabidopsis AtGFAT1 gene. AtGFAT1 was highly expressed in mature pollen grains, but its expression was not detectable in the rest of the organs. Pollen grains bearing the gfat1-2 knockout allele displayed defects in a polar deposition of pectin and callose in the pollen cell wall, leading to no genetic transmission of the gfat1-2 allele through the male gametophyte. AtGFAT1 overexpression increased glucosamine (GlcN) content and enhanced resistance to tunicamycin (Tm) treatment, while RNAi-mediated suppression reduced GlcN content and resistance to Tm treatment. However, the decrease in Tm resistance by RNAi suppression of AtGFAT1 was recovered by a GlcN supplement. The exogenous GlcN supplement also rescued gfat1-2/gaft1-2 mutant plants, which were otherwise not viable. The gfat1-2/gfat1-2 plants stopped growing at the germination stage on GlcN-free medium, but GlcN supplement allowed wild-type growth of gfat1-2/gfat1-2 plants. In addition, reactive oxygen species production, cell death and a decrease in protein N-glycosylation were observed in gfat1-2/gaft1-2 mutant plants grown on GlcN-free medium, whereas these aberrant defects were not detectable on GlcN-sufficient medium. Taken together, these results show that the reduction of protein N-glycosylation was at least partially responsible for many aberrant phenotypes in growth and development as well as the response to Tm treatment caused by AtGFAT1 deficiency in Arabidopsis.

Indexed as

ArabidopsisArabidopsis ProteinsGerminationGlutamine-Fructose-6-Phosphate Transaminase (Isomerizing)GlycosylationPollenTunicamycinArabidopsis ProteinsAT3G24090 protein, ArabidopsisGlutamine-Fructose-6-Phosphate Transaminase (Isomerizing)TunicamycinArabidopsisendoplasmic reticulum (ER) stressGFAThexosamine biosynthesis pathwaypollen-dependent transmission defectpollen germinationprotein N-glycosylationUDP-GlcNAc

Identifiers

PMID30775776
PMCPMC6436160
OpenAlexW2918098734

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.