Evidence map›Paper›PMID 30773771›Full record

ArticleMolecular plant pathology2019

Variation and inheritance of the Xanthomonas raxX-raxSTAB gene cluster required for activation of XA21-mediated immunity.

Furong Liu, Megan McDonald, Benjamin Schwessinger, Anna Joe, Rory Pruitt, Teresa Erickson, Xiuxiang Zhao, Valley Stewart, Pamela C Ronald

Abstract read
In one paragraph

Article in Molecular plant pathology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Root-knot nematodes produce functional mimics of tyrosine-sulfated plant peptides.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Article
  6. Plant immunity: Rice XA21-mediated resistance to bacterial infection.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. TheMicroorganisms · 2021
    Article
  12. Secrete or perish: The role of secretion systems inComputational and structural biotechnology journal · 2021
    Review
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Furong LiuDepartment of Plant Pathology and the Genome Center, University of California, Davis, CA, 95616, USA.ORCID 0000-0001-9753-2449
Megan McDonaldResearch School of Biology, Australian National University, Canberra, 0200, Australia.
Benjamin SchwessingerDepartment of Plant Pathology and the Genome Center, University of California, Davis, CA, 95616, USA.
Anna JoeDepartment of Plant Pathology and the Genome Center, University of California, Davis, CA, 95616, USA.
Rory PruittDepartment of Plant Pathology and the Genome Center, University of California, Davis, CA, 95616, USA.
Teresa EricksonDepartment of Plant Pathology and the Genome Center, University of California, Davis, CA, 95616, USA.
Xiuxiang ZhaoDepartment of Plant Pathology and the Genome Center, University of California, Davis, CA, 95616, USA.
Valley StewartDepartment of Microbiology & Molecular Genetics, University of California, Davis, CA, 95616, USA.ORCID 0000-0002-0031-0020
Pamela C RonaldDepartment of Plant Pathology and the Genome Center, University of California, Davis, CA, 95616, USA.

Funding

Receptor Kinase-Mediated Signaling in the Innate Immune ResponseR01GM055962 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI RONALD, PAMELA C · 1999 to 2013
$2.9M
Activation of immune receptor signaling by a sulfated peptideR01GM122968 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI RONALD, PAMELA C · 2017 to 2020
$2.1M
NIGMS NIH HHS R01 GM055962NIGMS NIH HHS R01 GM122968
6 · The paper itself

Abstract

The rice XA21-mediated immune response is activated on recognition of the RaxX peptide produced by the bacterium Xanthomonas oryzae pv. oryzae (Xoo). The 60-residue RaxX precursor is post-translationally modified to form a sulfated tyrosine peptide that shares sequence and functional similarity with the plant sulfated tyrosine (PSY) peptide hormones. The 5-kb raxX-raxSTAB gene cluster of Xoo encodes RaxX, the RaxST tyrosylprotein sulfotransferase, and the RaxA and RaxB components of a predicted type I secretion system. To assess raxX-raxSTAB gene cluster evolution and to determine its phylogenetic distribution, we first identified rax gene homologues in other genomes. We detected the complete raxX-raxSTAB gene cluster only in Xanthomonas spp., in five distinct lineages in addition to X. oryzae. The phylogenetic distribution of the raxX-raxSTAB gene cluster is consistent with the occurrence of multiple lateral (horizontal) gene transfer events during Xanthomonas speciation. RaxX natural variants contain a restricted set of missense substitutions, as expected if selection acts to maintain peptide hormone-like function. Indeed, eight RaxX variants tested all failed to activate the XA21-mediated immune response, yet retained peptide hormone activity. Together, these observations support the hypothesis that the XA21 receptor evolved specifically to recognize Xoo RaxX.

Indexed as

Multigene FamilyAmino Acid SequenceBacterial ProteinsConserved SequenceGene Transfer, HorizontalGenome, BacterialInheritance PatternsMutation, MissenseOryzaPhylogenyPlant ImmunityPlant ProteinsPlant RootsProtein Serine-Threonine KinasesRecombination, GeneticXanthomonasBacterial ProteinsPlant ProteinsProtein Serine-Threonine KinasesXa21 protein, Oryza sativaplant immunityraxX-raxSTAB gene clusterXA21Xoo

Identifiers

PMID30773771
PMCPMC6637879

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.