Evidence map›Paper›PMID 30771493›Full record

ArticlePapillomavirus research (Amsterdam, Netherlands)2019

Viral genome integration of canine papillomavirus 16.

Jennifer Luff, Michelle Mader, Peter Rowland, Monica Britton, Joseph Fass, Hang Yuan

Open access · goldAbstract read
In one paragraph

Article in Papillomavirus research (Amsterdam, Netherlands), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Canine and feline papillomaviruses: an update.Frontiers in veterinary science · 2023
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Canine papillomavirus type 16 associated to squamous cell carcinoma in a dog: virological and pathological findings.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Jennifer LuffDepartment of Population Health and Pathobiology, North Carolina State University, Raleigh, North Carolina, USA. Electronic address: jaluff@ncsu.edu.
Michelle MaderDepartment of Population Health and Pathobiology, North Carolina State University, Raleigh, North Carolina, USA.
Peter RowlandHistopath Consulting, Worcester, MA, USA.
Monica BrittonUC Davis Genome Center-Bioinformatics Core, University of California, Davis, CA, USA.
Joseph FassUC Davis Genome Center-Bioinformatics Core, University of California, Davis, CA, USA.
Hang YuanDepartment of Pathology, Georgetown University Medical Center, Washington, DC, USA.
North Carolina State University · USUniversity of California, Davis · USGeorgetown University · US

Funding

Mechanisms of Interferon Regulatory Factor Dysfunction by Cutaneous PapillomavirusesK01OD023219 · OD · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI LUFF, JENNIFER A · 2017 to 2022
$724k
NIH HHS K01 OD023219
6 · The paper itself

Abstract

Papillomaviruses infect humans and animals, most often causing benign proliferations on skin or mucosal surfaces. Rarely, these infections persist and progress to cancer. In humans, this transformation most often occurs with high-risk papillomaviruses, where viral integration is a critical event in carcinogenesis. The first aim of this study was to sequence the viral genome of canine papillomavirus (CPV) 16 from a pigmented viral plaque that progressed to metastatic squamous cell carcinoma in a dog. The second aim was to characterize multiple viral genomic deletions and translocations as well as host integration sites. The full viral genome was identified using a combination of PCR and high throughput sequencing. CPV16 is most closely related to chipapillomaviruses CPV4, CPV9, and CPV12 and we propose CPV16 be classified as a chipapillomavirus. Assembly of the full viral genome enabled identification of deletion of portions of the E1 and E2/E4 genes and two viral translocations within the squamous cell carcinoma. Genome walking was performed which identified four sites of viral integration into the host genome. This is the first description of integration of a canine papillomavirus into the host genome, raising the possibility that CPV16 may be a potential canine high-risk papillomavirus type.

Indexed as

Genome, ViralVirus IntegrationAnimalsCarcinoma, Squamous CellDNA, ViralDog DiseasesDogsMalePapillomaviridaePapillomavirus InfectionsSequence DeletionSkin NeoplasmsTranslocation, GeneticDNA, ViralCanineCarcinogenesisIntegrationPapillomavirusSquamous cell carcinoma

Identifiers

PMID30771493
PMCPMC6402295
OpenAlexW2913366946

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.