Evidence map›Paper›PMID 30770999›Full record

ArticleActa neuropathologica2019

H3.3 K27M depletion increases differentiation and extends latency of diffuse intrinsic pontine glioma growth in vivo.

André B Silveira, Lawryn H Kasper, Yiping Fan, Hongjian Jin, Gang Wu, Timothy I Shaw, Xiaoyan Zhu, Jon D Larson, John Easton, Ying Shao and 16 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Acta neuropathologica, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 122 citations in OpenAlex.

  1. Article
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  11. Ezh2 Loss-of-Function Alters Zebrafish Cerebellum Development.International journal of molecular sciences · 2025
    Article
  12. Review
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  18. An E2 ubiquitin-conjugating enzyme links diubiquitinated H2B to H3K27M oncohistone function.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  19. Review
  20. Review

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 3 institutions in 1 country.

André B SilveiraDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Lawryn H KasperDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Yiping FanDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Hongjian JinDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Gang WuDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Timothy I ShawDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Xiaoyan ZhuDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Jon D LarsonDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
John EastonDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Ying ShaoDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Donald A YergeauDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Celeste RosencranceDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Kristy BoggsDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Michael C RuschDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Liang DingDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Junyuan ZhangDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
David FinkelsteinDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Rachel M NoyesDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Brent L RussellDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Beisi XuDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Alberto BroniscerDepartment of Pediatrics, UPMC Children's Hospital of Pittsburgh, Pittsburgh, PA, USA.
Cynthia WetmoreCenter for Cancer and Blood Disorders, Phoenix Children's Hospital, Phoenix, AZ, USA.
Stanley B PoundsDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
David W EllisonDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Jinghui ZhangDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Suzanne J BakerDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA. Suzanne.Baker@StJude.org.
St. Jude Children's Research Hospital · USCenter for Cancer and Blood Disorders · USChildren's Hospital of Pittsburgh · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
The DNA Damage Response and Tumorigenesis in the BrainP01CA096832 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI BAKER, SUZANNE J. · 2003 to 2025
$38.0M
PROFESSIONAL ONCOLOGY EDUCATION PROGRAMR25CA023944 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SUZANNE A. GRONEMEYER · 1986 to 2026
$8.3M
Cooperating Pathways in GliomagenesisR01CA188516 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI BAKER, SUZANNE J. · 2014 to 2018
$1.9M
MULTIMODAL PRECLINICAL CANCER IMAGING AND THERAPY RESEARCH SPECIALISTR50CA211481 · NCI · WASHINGTON UNIVERSITY · PI AKERS, WALTER JOHN · 2016 to 2020
$841k
NCI NIH HHS P01 CA096832NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA188516NCI NIH HHS R25 CA023944NCI NIH HHS R50 CA211481
6 · The paper itself

Abstract

Histone H3 K27M mutation is the defining molecular feature of the devastating pediatric brain tumor, diffuse intrinsic pontine glioma (DIPG). The prevalence of histone H3 K27M mutations indicates a critical role in DIPGs, but the contribution of the mutation to disease pathogenesis remains unclear. We show that knockdown of this mutation in DIPG xenografts restores K27M-dependent loss of H3K27me3 and delays tumor growth. Comparisons of matched DIPG xenografts with and without K27M knockdown allowed identification of mutation-specific effects on the transcriptome and epigenome. The resulting transcriptional changes recapitulate expression signatures from K27M primary DIPG tumors and are strongly enriched for genes associated with nervous system development. Integrated analysis of ChIP-seq and expression data showed that genes upregulated by the mutation are overrepresented in apparently bivalent promoters. Many of these targets are associated with more immature differentiation states. Expression profiles indicate K27M knockdown decreases proliferation and increases differentiation within lineages represented in DIPG. These data suggest that K27M-mediated loss of H3K27me3 directly regulates a subset of genes by releasing poised promoters, and contributes to tumor phenotype and growth by limiting differentiation. The delayed tumor growth associated with knockdown of H3 K27M provides evidence that this highly recurrent mutation is a relevant therapeutic target.

Indexed as

MutationAnimalsBrain Stem NeoplasmsCell DifferentiationCell Line, TumorDiffuse Intrinsic Pontine GliomaDisease Models, AnimalGene Knockdown TechniquesHistonesMiceHistonesBivalentDifferentiationDIPGEpigeneticGliomaH3K27me3Histone H3K27MIsogenic knockdownOncohistoneStemness

Identifiers

PMID30770999
PMCPMC6546611
OpenAlexW2914996132

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.