Evidence map›Paper›PMID 30770472›Full record

ArticleThe Journal of biological chemistry2019

Profiling of rotavirus 3'UTR-binding proteins reveals the ATP synthase subunit ATP5B as a host factor that supports late-stage virus replication.

Lili Ren, Siyuan Ding, Yanhua Song, Bin Li, Muthukumar Ramanathan, Julia Co, Manuel R Amieva, Paul A Khavari, Harry B Greenberg

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  6. ATP5B Is an Essential Factor for Hepatitis B Virus Entry.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Lili RenFrom the Department of Medicine, Division of Gastroenterology and Hepatology, Stanford, California 94305; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California 94305; the Palo Alto Veterans Institute of Research, Veterans Affairs Palo Alto Health Care System, Palo Alto, California 94304; the School of Pharmaceutical Sciences, Nanjing Tech University, Nanjing 211816, China.
Siyuan DingFrom the Department of Medicine, Division of Gastroenterology and Hepatology, Stanford, California 94305; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California 94305; the Palo Alto Veterans Institute of Research, Veterans Affairs Palo Alto Health Care System, Palo Alto, California 94304. Electronic address: syding@stanford.edu.
Yanhua SongFrom the Department of Medicine, Division of Gastroenterology and Hepatology, Stanford, California 94305; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California 94305; the Palo Alto Veterans Institute of Research, Veterans Affairs Palo Alto Health Care System, Palo Alto, California 94304; the Institute of Veterinary Medicine, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China.
Bin LiFrom the Department of Medicine, Division of Gastroenterology and Hepatology, Stanford, California 94305; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California 94305; the Palo Alto Veterans Institute of Research, Veterans Affairs Palo Alto Health Care System, Palo Alto, California 94304; the Institute of Veterinary Medicine, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China.
Muthukumar Ramanathanthe Program in Epithelial Biology, Stanford University School of Medicine, Stanford, California 94305.
Julia CoDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California 94305.
Manuel R AmievaDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California 94305.
Paul A Khavarithe Palo Alto Veterans Institute of Research, Veterans Affairs Palo Alto Health Care System, Palo Alto, California 94304; the Program in Epithelial Biology, Stanford University School of Medicine, Stanford, California 94305.
Harry B GreenbergFrom the Department of Medicine, Division of Gastroenterology and Hepatology, Stanford, California 94305; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California 94305; the Palo Alto Veterans Institute of Research, Veterans Affairs Palo Alto Health Care System, Palo Alto, California 94304. Electronic address: hbgreen@stanford.edu.
VA Palo Alto Health Care System · USStanford University · USNanjing Tech University · CN

Funding

Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI Vittorio Sebastiano · 2007 to 2026
$71.4M
Stanford/UNC Biomimetic U19 Research CenterU19AI116484 · NIAID · STANFORD UNIVERSITY · PI KUO, CALVIN J · 2015 to 2025
$13.5M
Mechanisms of Epidermal Homeostasis and Early NeoplasiaR01AR043799 · NIAMS · STANFORD UNIVERSITY · PI PAUL KHAVARI · 1998 to 2026
$9.1M
Signaling Regulators of Epithelial Homeostasis and NeoplasiaR01AR049737 · NIAMS · STANFORD UNIVERSITY · PI PAUL KHAVARI · 2004 to 2026
$7.1M
VIRAL GASTROENTERITIS--BASIS OF PROTECTION AND VIRULENCER01AI021362 · NIAID · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 1989 to 2014
$5.4M
Regulation of Rotavirus Replication, Virulence, and Host Range Restriction by the Innate Immune SystemR01AI125249 · NIAID · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI GREENBERG, HARRY BERNARD · 2017 to 2021
$2.1M
Viral Gastroenteritis: Basis of Virulence and ProtectionR56AI021362 · NIAID · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI GREENBERG, HARRY BERNARD · 2015 to 2015
$506k
LTQ Orbitrap XL ETD Mass SpectrometerS10RR027425 · NCRR · STANFORD UNIVERSITY · PI WANDLESS, THOMAS JAMES · 2010 to 2010
$500k
Genetic and Biochemical Interrogation of Rotavirus-Cohesin InteractionK99AI135031 · NIAID · STANFORD UNIVERSITY · PI DING, SIYUAN · 2018 to 2018
$132k
Rotavirus: Studies of the Effectors and Mechanisms of Heterotypic Humoral Immunity in Human Intestinal Epithelial CellsI01BX000158 · VA · VETERANS ADMIN PALO ALTO HEALTH CARE SYS · PI GREENBERG, HARRY BERNARD · 2011 to 2022
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BLRD VA I01 BX000158NCI NIH HHS P30 CA124435NCRR NIH HHS S10 RR027425NIAID NIH HHS K99 AI135031NIAID NIH HHS R01 AI021362NIAID NIH HHS R01 AI125249NIAID NIH HHS R56 AI021362NIAID NIH HHS U19 AI116484NIAMS NIH HHS R01 AR043799NIAMS NIH HHS R01 AR049737
6 · The paper itself

Abstract

Genome replication and virion assembly of segmented RNA viruses are highly coordinated events, tightly regulated by sequence and structural elements in the UTRs of viral RNA. This process is poorly defined and likely requires the participation of host proteins in concert with viral proteins. In this study, we employed a proteomics-based approach, named RNA-protein interaction detection (RaPID), to comprehensively screen for host proteins that bind to a conserved motif within the rotavirus (RV) 3' terminus. Using this assay, we identified ATP5B, a core subunit of the mitochondrial ATP synthase, as having high affinity to the RV 3'UTR consensus sequences. During RV infection, ATP5B bound to the RV 3'UTR and co-localized with viral RNA and viroplasm. Functionally, siRNA-mediated genetic depletion of ATP5B or other ATP synthase subunits such as ATP5A1 and ATP5O reduced the production of infectious viral progeny without significant alteration of intracellular viral RNA levels or RNA translation. Chemical inhibition of ATP synthase diminished RV yield in both conventional cell culture and in human intestinal enteroids, indicating that ATP5B positively regulates late-stage RV maturation in primary intestinal epithelial cells. Collectively, our results shed light on the role of host proteins in RV genome assembly and particle formation and identify ATP5B as a novel pro-RV RNA-binding protein, contributing to our understanding of how host ATP synthases may galvanize virus growth and pathogenesis.

Indexed as

3' Untranslated RegionsGenome, ViralHEK293 CellsHumansMitochondrial Proton-Translocating ATPasesRNA-Binding ProteinsRNA, ViralRotavirusViral ProteinsVirus Assembly3' Untranslated RegionsATP5F1B protein, humanMitochondrial Proton-Translocating ATPasesRNA-Binding ProteinsRNA, ViralViral ProteinsATP synthasebiotin proximity ligationnonenveloped double-stranded RNA virusproteomicsRNA-binding proteinRNA–protein interactionRNA virusrotavirusviral gastroenteritisvirologyvirus assemblyvirus–host interaction

Identifiers

PMID30770472
PMCPMC6463704
OpenAlexW2913600982

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.